Acidipropionibacterium virtanenii: JS278_00927
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Entry
JS278_00927 CDS
T05538
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
acij
Acidipropionibacterium virtanenii
Pathway
acij03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
acij00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JS278_00927 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
acij03021
]
JS278_00927 (rpoC)
03400 DNA repair and recombination proteins [BR:
acij03400
]
JS278_00927 (rpoC)
Enzymes [BR:
acij01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JS278_00927 (rpoC)
Transcription machinery [BR:
acij03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JS278_00927 (rpoC)
DNA repair and recombination proteins [BR:
acij03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JS278_00927 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AXE38110
UniProt:
A0A344US62
LinkDB
All DBs
Position
1035152..1039030
Genome browser
AA seq
1292 aa
AA seq
DB search
MLDTNYYDRLQIGLATADQIRAWSHGEVKKPETINYRTLKPERDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRSNVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDI
APKDLEKVIYFAAYMITSVDEEARHRDLPSLEAKVQAERTHMEKRRDSELEARRTKLEED
LAQLEADGAKADTRRKVKDGGEKEIRQIEHRAQRLLDRLDAVWDRFKNLKVQDLEGDEVL
YREMKSRFGKYFEGFMGAEAVKRRLHDFDLVAESASLRDIIKNGKGQKKTRALKRLKVVQ
PFIDSGNSPVGMVLDAVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDSLFDNGRRGRPVSGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKMHQCGLPKTMALELFKPFVMKRLADLEHAQNVKSAKRMVERQR
PVVWDVLEEVIKEHPVLLNRAPTLHRLGIQAFEPQLIEGKAIQLHPLVCSAFNADFDGDQ
MAVHLPLSAEAQAEARVLMLSTNNILKPADGRPVALPSHEMIIGAYFLTMALDGLKGHGR
AFSSISEAIMAHDAGELEIGAKIKLRLHGVVPPHGETVRADGSVILDTTLGQALFNEVLP
ADYPFVDFLVGKKEIGRIVNTLAEERSQLEVAEILDRLKDIGYRWGSLSGVTVSIGDVQT
PPTKPEILAGYERRAEKVDKEYDRGAVTGEERRQDLIQIWTEATAELTAAMEANFTQTNP
IYMMVHSGARGNMTQMRQIAAMRGLVADPKGEIIPRPIKSNFREGLTVLEYFISTHGGRK
GQADTALRTADSGYLTRRLVDVSQDVIVREEDCGTTRGIFKIIAVDDGAGGLVPAKDLET
SVYARCLAADAVDANGEVVVEAASDLGDAEIKKMIAHGISRIKVRSVLTCAATLGCCARC
YGRSLSTGNVVDVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRVVELFEA
RTPKGKAPIAEAAGVIRAEESDHRRKLVLVRDDGEEDVEYPVPRRARLEFDVDDTHHVIR
DGVRVEAGEQLMGGTADPQDVLRILGVRRVEEHLVAEVQKVYNTQGAGIHEKHIEIIIRQ
MMRRITVIESGDTPMMPGELVDRPHYEAANRTAVAEGGRPAEGRPVLMGITKASLATESW
LSAASFQETTKVLTDAAINGKTDTLVGLKENVMLGKLIPAGTGMERYRNMRVEPTAEAKA
AAFTMNYDPFDYDFGSSSAAVPLDDLDFGDMG
NT seq
3879 nt
NT seq
+upstream
nt +downstream
nt
gtgctggacaccaattactacgacaggctgcagatcggtctggcgaccgccgatcagatc
cgcgcctggagccacggcgaggtcaagaagcccgagaccatcaactaccgcaccctcaag
cccgagcgcgacggtctgttctgcgagaagatcttcgggcccaccagggactgggagtgc
tactgcggcaagtacaagcgggtgcgcttcaagggcatcatctgcgagcgctgcggcgtc
gaggtgacccgttccaatgtgcgacgcgagcggatgggccatatcgagctggccgccccc
gtcacccacatctggtacttcaagggcgttccgtcgcggctgggctacctgctcgacatc
gctccgaaggacctggagaaggtcatctacttcgcggcctacatgatcacctcggtcgat
gaggaggcgcgccaccgcgacctgccgtcgctggaggccaaggtgcaggcggagcgcacc
catatggagaagcgccgcgactccgagctggaggcccgccggaccaagctggaggaggac
ctcgcccagctcgaggccgacggcgccaaggccgacactcgccgcaaggtcaaggacggc
ggggagaaggagatccgtcagatcgagcaccgcgcgcagcgcctgctcgaccgtctggac
gccgtgtgggaccgcttcaagaacctcaaggtgcaggacctcgagggcgatgaggtgctc
taccgcgagatgaagagccgcttcggcaagtacttcgaggggttcatgggggccgaggcc
gtcaagcgccgcctccatgacttcgacctggtggccgagtcggcgtccctgcgcgacatc
atcaagaacggcaagggccagaagaagacccgtgccctcaagcggctcaaggtcgtccag
cccttcatcgactccggcaactcgcccgtgggcatggtcctggacgccgtcccggtgatc
cccccggacctgcgcccgatggtgcagctggacggcggtcgcttcgccacctccgacctc
aacgacctctaccggcgcgtcatcaaccgcaacaaccggctgaagcgtctgctggatctc
ggcgcccccgagatcatcgtcaacaacgagaagcggatgctccaggaggccgtcgactcg
ctcttcgacaacggccgtcgcggccgcccggtctcggggccgggcaaccgtccgctgaag
tcgctgtccgacatgctcaagggcaagcagggacggttccgccagaacctgctcggcaag
cgcgtcgactactcgggccgttcggtcatcgtggtcggcccgcagctcaagatgcaccag
tgcggcctgcccaagacgatggctctggagctgttcaagcccttcgtcatgaagcgtctg
gccgatctggagcacgcccagaacgtgaagtccgccaagcggatggtggagcgtcagcgc
ccggtggtctgggatgtcctcgaagaggtcatcaaggagcacccggtgctgctgaaccgc
gcccccaccctgcaccgtctgggcatccaggccttcgagccgcagctcatcgagggcaag
gccatccagctgcacccgctggtctgctcggccttcaacgccgacttcgacggcgatcag
atggccgtgcacctgcccctgtccgccgaggcccaggccgaggcgcgggtgctgatgctg
tcgaccaacaacatcctcaagccggctgacggccgaccggtcgcgctgcccagccatgag
atgatcatcggcgcctacttcctcacgatggccctggacggcctcaagggccatgggcgg
gcgttctcctcgatctccgaggcgatcatggcccatgacgccggggagctggagatcggt
gccaagatcaagctgcgcctgcacggcgtcgtcccgccgcacggcgagacggtccgcgcc
gacggttcggtgatcctggacacgaccctgggacaggccctgttcaacgaggtgctgccg
gccgattaccccttcgtcgacttcctggtcggcaagaaggagatcggcaggatcgtcaac
accctcgccgaggagcgcagccagcttgaggtggccgagattctcgaccgcctcaaggac
atcggctaccggtggggctcgctgtcgggcgtcaccgtatccatcggcgacgtgcagacc
ccgccgaccaagccggagatcctggccggatacgagcgtcgcgccgagaaggtggacaag
gagtacgaccgcggcgccgtgaccggcgaggagcgccgtcaggacctcatccagatctgg
accgaggccaccgcggagctgaccgccgccatggaggccaacttcacccagaccaacccg
atctacatgatggtgcactcgggcgcacgagggaacatgacccagatgcgtcagatcgcc
gccatgcgaggcctggtggccgacccgaagggcgagatcatcccccgcccgatcaagtcg
aacttccgcgagggcctgacggtcctggagtacttcatctccacccacggtggacggaag
ggccaggccgacaccgctctgcggaccgccgactcgggctacctgacccgacggctggtc
gacgtctcccaggacgtcatcgtccgtgaggaggactgcggcacgacccgcggcatcttc
aagatcatcgcggtcgacgacggcgccggtggcctggtgcccgccaaggacctggagacc
tcggtgtacgcccgctgcctggccgccgacgcggtcgacgcgaacggggaggtggtcgtc
gaggccgcctccgatctgggcgacgccgagatcaagaagatgatcgcccacggcatcagc
aggatcaaggtgcgctcggtgctcacctgcgccgcgaccctgggctgctgcgccaggtgc
tacggccgatcgctgtcgaccgggaatgtggtcgacgtcggcgaggccgtcgggatcatc
gccgcccagtcgatcggcgagcccggtacccagctgacgatgcgtaccttccacaccggc
ggtgtggcgggcgacgacatcacgcagggtcttccgcgtgtcgtcgagctcttcgaggcc
cgtaccccgaagggcaaggcgccgatcgccgaggccgccggagtgatccgtgccgaggag
tccgatcaccggcgcaagctggtgctcgtccgcgatgatggcgaggaggacgtcgagtac
ccggtgcccaggcgcgcccgtctcgagttcgacgtcgacgacacccatcacgtcatccgt
gacggggtgcgcgtcgaggccggcgagcagctcatgggcggtaccgcggacccgcaggac
gtgcttcgaatcctcggcgtgcgcagggtcgaggagcatctggtggccgaggtccagaag
gtgtacaacacccagggcgccggcatccacgagaagcacatcgagatcatcatccgccag
atgatgaggcggatcaccgtcatcgagtccggcgacaccccgatgatgcccggcgagctg
gtcgatcgtcctcactacgaggccgcgaaccgcacggcggtggccgagggcgggcgtccc
gccgagggccggccggtgctgatgggcatcaccaaggcgtcgctggccaccgagtcctgg
ctgtcggcggcctccttccaggagaccaccaaggtgctcaccgatgcggcgatcaacggc
aagaccgacaccctggtcggcctcaaggagaacgtcatgctcggaaagctcatcccggcc
ggcaccggtatggagcgctaccgcaacatgcgcgtcgagccgactgccgaggcgaaggcg
gcagccttcacgatgaactacgacccgttcgactacgacttcggatcgagttccgcggct
gtgccgctggacgacctggacttcggcgatatgggctga
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