Candidatus Azoamicus ciliaticola: ESZ_00206
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Entry
ESZ_00206 CDS
T07098
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
acil
Candidatus Azoamicus ciliaticola
Pathway
acil03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ESZ_00206 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acil03019
]
ESZ_00206 (rne)
03009 Ribosome biogenesis [BR:
acil03009
]
ESZ_00206 (rne)
Enzymes [BR:
acil01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
ESZ_00206 (rne)
Messenger RNA biogenesis [BR:
acil03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ESZ_00206 (rne)
Ribosome biogenesis [BR:
acil03009
]
Prokaryotic type
rRNA processing factors
ESZ_00206 (rne)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
CAB3976406
UniProt:
A0A6J5JWY4
LinkDB
All DBs
Position
1:159453..161030
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AA seq
525 aa
AA seq
DB search
MMKKILINTNEFNETRLAVLEDDFLFNLEIENKKLIPKKGNIYKGVITKVEPSLDAVFVN
YGENKEGFLPFKEIIKDYVNFNKSSKNLLTKGKEILVQIEKEERKNKSAALTTYISLAGF
YLVLMPSSSNLEGISRHIEGEMRNNLKDKLTNISIPDDMGIIVRTAGISKSLEELKWELN
VLLAQYNLIKNSSKIFKAPCLIHEESDLIVRSVRDYLRSDIEEIIVDNIKTFNYLYKYLV
NINSDFVSKIRLYCENMPLFSKYKVEQQIELAFKREIFLPSGGSIIIDHTEALVSIDVNS
AKSNRCLDIKETALQTNLEAINEIARQMRLRDLGGLIIVDLIDMPDNNSQKTIEKKIKEL
ILFDRAKIQIGKISKFGLLEMSRQRIRQSLSESNQEVCDKCNGNGKVYNIETLSNKILRA
IEEESYNTNQINIEVNIKLMVYLLNLKKIELLRIEKVQNIKIIIIPNDQLSLLDYKIYKL
KLSQKNKYKEMIKNNNIKGKKNVGINVKNDSHVSSIVKAIIKIIK
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
atgatgaaaaaaatactaataaatacaaacgaatttaacgagacacgcttagctgtttta
gaagacgattttttatttaacttagaaattgaaaataaaaaattaattccaaaaaaaggt
aatatatataaaggtgtcataaccaaagttgaacctagcttagatgcagtttttgtaaat
tatggcgaaaataaagaaggatttttgccgttcaaggaaataataaaggactatgttaat
ttcaataaatctagtaaaaatttattgacaaagggcaaggaaatattagtacaaatagaa
aaagaagaaagaaaaaataaaagcgcagcgttaacaacatatataagtttagctggattt
tatttagttttaatgcccagtagttccaatttagaagggatatctagacatatagaaggt
gaaatgagaaataatttaaaagataaactaacaaatataagcataccagatgatatggga
ataatagttagaacagcaggtataagtaaaagtttggaagagttaaaatgggaattgaat
gttttactagctcaatataatctaattaaaaattccagtaaaatttttaaagctccatgc
ttaattcatgaagaaagcgatttaatagtaagatctgttagagattatttacgttcagat
atagaagaaataatagttgataatattaaaacttttaattatttatataaatatttagtt
aatataaattctgattttgttagtaagatacgtttatattgtgaaaatatgcccttattt
agcaaatataaggttgaacaacaaattgaattggcatttaaacgtgaaatatttttacct
tctggaggatccattattatagatcatactgaagcattagtttctatagatgtaaattca
gcaaaatctaacagatgtctagatataaaggaaacagcgttacaaacaaatttagaagct
ataaatgaaatagccagacaaatgagattaagggatttaggcggattaataatagttgat
ctaatagacatgccagataataatagtcagaaaacaatagaaaaaaaaataaaagaatta
attttatttgacagagccaaaatccaaataggtaaaatatctaaatttggattgttagaa
atgtctagacaaagaatacgtcaatctttatcagaatcaaatcaagaagtatgtgataaa
tgtaatggaaatggcaaggtttataacatagaaacacttagcaataaaatattaagagcg
attgaagaagaatcttataatacaaatcaaataaatatagaagttaatataaagttaatg
gtttatttattaaatttgaaaaaaatagaactgttaagaatagaaaaagttcaaaatatc
aaaataataattataccaaatgatcaattatctttattggattataaaatatataagtta
aaactttctcaaaaaaataaatataaagaaatgattaaaaataataatataaaggggaaa
aaaaatgtaggaattaatgtaaaaaacgactctcatgtatcatcaattgtaaaagcaatt
atcaaaataataaaataa
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