Candidatus Azoamicus ciliaticola: ESZ_00334
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Entry
ESZ_00334 CDS
T07098
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
acil
Candidatus Azoamicus ciliaticola
Pathway
acil03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
acil00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ESZ_00334 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
acil03021
]
ESZ_00334 (rpoC)
03400 DNA repair and recombination proteins [BR:
acil03400
]
ESZ_00334 (rpoC)
Enzymes [BR:
acil01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ESZ_00334 (rpoC)
Transcription machinery [BR:
acil03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ESZ_00334 (rpoC)
DNA repair and recombination proteins [BR:
acil03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ESZ_00334 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
CAB3976519
UniProt:
A0A6J5JZK7
LinkDB
All DBs
Position
1:272935..276999
Genome browser
AA seq
1354 aa
AA seq
DB search
MKDIIDIIKRNTNITNFNCIKIGLASPEQILSRSYGEIKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKKLKHRGIICEKCGVEVTTAEVRRSRMASITLATPIAHIWFLKSL
PSKIGLILDINLKDVEKILYFEQYVVIDPGLSLLKKGQLLTEEEYLDSTKQYGDEIIVKM
GAEAIQLLLKDLNLKEEIKITKEKIKTTTSDIKNKKLYKRLKILELFINSNNKPEWMILN
VLPVLPPDLRPLVPLDGGRFASSDLNDLYRRVINRNNRLKKLIDLNAPNIIIKNEKRMLQ
EAIDALIDNGRRGKTINGSNKRPLKSLADLIKGKQGRFRQNLLGKRVDYSGRSVIVVGPN
LKLNQCGLPRKMAIELFKPFIFGELKKRNITTTIKSSKKMVEEEGAYIWDILNDIVQDHP
VLLNRAPTLHRLGIQAFEPILIDGKAIQLHPLVCTAFNADFDGDQMAVHIPLTIEAQLEA
RILMMSTNNILSPANGEPIILPSQDIVLGLYYLSKEKKCTNKSIKYFKNVNDVEKAYENS
QIGLHEKIKLKINNSFTETTCGRAILSRVLPINITFDSINKLMTKKEISSLISTCYKNNS
IKDSVILADNLMRIGFEYATKSGISIGIEDIDIPKEKYDIIKQTEEQILTIEDAYSNGLI
NKEDRYNQIIDIWSKANENITKVLMKKLALKEIINEEGKIITEDSFNPIYMMAESGARGS
INQIRQLAGMRGLMAKPDGSIIETPITANFREGLNILQYFISTHGARKGLADTALKTANS
GYLTRRLVDVAQDVVITQNDCETTDSIEITPIIEDGNVIEKLTDRIKGRILQEDIKNKKD
EIIITKNTLLNDNEIILIEKLNIKKIKVRSVIKCKLKYGVCSKCYGTDLTTNALVNIGEA
VGVIAAQSIGEPGTQLTMRTFHIGGAASRISMNNQIQCKTDGILEYKNIKTIIHEKTKNI
ISISRSGKIIILDKEKKELEQYKIPYGAIIHKNNAHESKKDEIIATWDPHNLPIISEITG
TIKYINLIEGLTIKKELDETTGLSNIIVIDSNKSNQNINNIKPCIEIINKELKIENNDTK
ITNYFLSPGTIINVENHQKINIGDIIAKIPKDTSKVKDITGGLPRVADIFEARKPKDPAI
LADTSGIVIFGKETKDKNRILIKDAEGNFNELLIPKWKNVNVFENENVIKGDILVEGEHN
LHDILRLLGVNELTDHIKREVQSVYRLQGVRIDDKHIEVIIKQMLKKGIIIDSGESNLLK
DDQENIFLINDLNKKLKNENKKEILYKTILLGITKAALTTDSFISAASFQETTKVLTEAA
ISGKKDRLLGLKENVIVGKLIPAGTGFHKKINTI
NT seq
4065 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacataatagacataattaaacgaaatacaaatataacaaattttaattgcatc
aaaataggccttgcatctccagaacaaatcttatcaagatcgtatggagaaattaaaaaa
ccagaaacaataaattatagaacatttaaacctgaaagagacggactgttttgtgcaaaa
atctttggtccaattaaagactacgaatgtttatgtggtaaatataaaaaattaaaacat
agaggcataatatgcgaaaaatgtggagtagaagtaactactgctgaagtaagaagaagt
agaatggctagtataacattggctactccgatagcacatatatggtttttaaaatcatta
ccatcaaaaattgggttaatattagatataaatttaaaagatgtggaaaaaatattatac
tttgaacaatatgtagttatagatccaggattaagtttgctcaaaaaagggcaattgtta
acagaagaagaatatttagattcaacaaaacaatatggtgatgaaataattgtaaaaatg
ggtgccgaagcaatacaattattattaaaagatctaaatttaaaagaagaaattaaaata
acaaaagaaaaaattaaaacaacaacatctgatataaaaaataaaaaattatacaaaaga
cttaaaatattagaattattcataaattcaaataataaaccagaatggatgattttaaat
gtattgccagtattaccaccagatttaagaccattggtacctttagatggtggaagattt
gcgtcatcagatcttaatgacttatatagaagagtaataaatagaaataatagattaaaa
aagctaatagatctaaatgcaccaaatataataataaagaatgaaaaaagaatgctacaa
gaagcaatagatgctttaatagataacggacgcagaggtaaaactataaatggatcaaat
aaaagaccactaaaatctttggcagatttaatcaagggtaaacaaggaagatttagacaa
aatttattaggcaaacgtgtagattattctggtagatctgtaatagttgtaggccccaac
ctaaaattaaatcaatgcggattaccaagaaaaatggcaatagaattatttaaacccttt
atatttggcgaacttaaaaaaagaaatataaccaccacaattaaaagctcaaaaaaaatg
gtagaagaagaaggagcttacatttgggacattttaaacgatatagttcaagatcatcct
gtattactaaatagagctccaacattacatcgactaggaatacaagcttttgaacctatt
ttgatagacggaaaggcaatacaattacatcctttagtatgcactgcttttaatgcagat
tttgatggcgaccaaatggctgtacacataccattaacaatagaggcacaactagaagca
agaattttaatgatgtcaacaaataacatattatccccagcaaatggtgaaccaataata
ttaccatctcaagatatagtattagggctttattacctatctaaagaaaaaaaatgtaca
aataaaagtataaaatattttaaaaatgtaaatgacgtagaaaaagcatacgaaaactca
caaataggattgcacgaaaaaataaaattaaagataaataattcatttacagaaacaact
tgtggtcgcgctattttaagcagagtattacctataaatattactttcgactcaattaac
aaattaatgacaaagaaagaaatatcgagcttaataagcacgtgttacaaaaacaatagt
ataaaagacagcgtaatattagcagataaccttatgagaataggatttgaatatgcaaca
aagtcaggaatatcgattggtatagaagatatagatataccaaaagaaaagtatgacata
ataaaacaaactgaagaacaaattcttacaatagaagatgcatattcaaatggattaata
aacaaagaagatagatacaatcaaataatagatatatggtcaaaagcaaatgagaatata
acgaaagttctaatgaaaaaattagctctgaaagaaataataaacgaagaaggtaagatt
attacagaagattcttttaacccaatatacatgatggcggaatcaggtgctagaggatca
ataaatcaaataagacaattagctggaatgcgaggattaatggcgaagccagatggttct
ataatagaaacacctataacagcaaattttagagaaggtctgaatattttacaatatttt
atatctactcatggcgcaagaaaaggattggctgatactgctttaaaaacagcaaactca
ggttatttaacacgaagattagttgatgttgcacaagacgttgtaataacacaaaatgac
tgcgaaactaccgatagtatagaaataacaccaataatagaagatggcaatgtaatagaa
aaattaacggatagaatcaaaggaagaatactacaagaagacattaaaaacaaaaaagac
gagattattataacaaaaaacacattattaaatgacaacgaaataattttaatagaaaag
ttaaatataaaaaaaataaaagtaagatcagtcataaaatgtaaattaaaatatggcgta
tgttcaaaatgttatggaacagatttgacaacaaatgcattagtaaatataggtgaagct
gttggcgtaatagctgctcaatcaataggtgaaccaggtactcaattaacaatgagaaca
tttcatataggtggagcagcttctagaataagcatgaataatcaaatacagtgtaaaaca
gatggaatactcgagtataaaaatataaaaacaataattcatgaaaaaacaaaaaatata
atatcaatttcacgctcaggtaaaataataatacttgacaaagaaaaaaaagaattagaa
caatataaaataccttacggagcaataatacataaaaataatgcacatgaaagcaaaaaa
gacgaaattatagcaacatgggatccacacaatctaccaataatatctgaaataactggt
acaattaaatacataaatttaatagaaggcctaacaattaaaaaagaattagacgaaacc
actggattatcaaacataattgttattgattcaaataaaagcaatcaaaatattaataat
ataaaaccatgcatagaaataataaataaagaacttaagatagaaaataatgatacaaaa
ataactaattattttttatctcctggaacaataataaacgtagaaaatcatcaaaaaatt
aacataggcgacataatagctaaaataccaaaagatacttcaaaagtaaaagatataaca
ggtggattaccacgtgtagcagatatttttgaagcaagaaaacctaaagatcctgctata
ctagcagatacatctgggattgtcatttttggaaaagaaacaaaagataaaaatagaatt
ttaataaaagatgcagaaggtaatttcaatgaactattaattccaaaatggaaaaatgta
aatgtattcgaaaatgaaaatgtaataaaaggcgatatcttggtagaaggtgaacacaat
ttacatgatattttaagattattaggtgtaaacgaattaactgaccatattaaaagagaa
gtgcaaagtgtttatagactacaaggtgttagaatagatgataaacacatagaagtaata
attaaacaaatgcttaaaaaaggtataataatagattctggtgaaagtaatttattaaaa
gacgatcaagaaaacatatttttaataaatgatctaaataaaaaattaaaaaatgaaaat
aaaaaagaaatactatataaaacaatattgttaggcataacaaaagctgctttaactaca
gattcttttatatcagccgcatcatttcaagaaaccactaaagtattaacagaagctgct
ataagtggaaaaaaagatagattattaggattgaaagaaaatgtaatagtaggaaaatta
attccagcaggcacaggctttcataaaaaaataaatacaatatga
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integrated database retrieval system
