Acidocella sp. MX-AZ03: GT370_03840
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Entry
GT370_03840 CDS
T08719
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
acim
Acidocella sp. MX-AZ03
Pathway
acim03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
acim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GT370_03840 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
acim03400
]
GT370_03840 (mfd)
Enzymes [BR:
acim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GT370_03840 (mfd)
DNA repair and recombination proteins [BR:
acim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GT370_03840 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
UB2H
RecG_dom3_C
SecA_DEAD
AAA_16
FluMu_N
AAA_30
Motif
Other DBs
NCBI-ProteinID:
WBO60005
LinkDB
All DBs
Position
680285..683710
Genome browser
AA seq
1141 aa
AA seq
DB search
MIPVYGAPEGVDALVLVRRLGEHDGPVLHVARDDARLAALAEEIGFFGPEIEVISLPAWD
CLPYDRVSPNGGIVAERISALSRLQAEPGKKRIVLTTVNAALQKVAPRSALAGAGLSLAK
GEQVSLSDVASFLEADGYRRTGMVMEAGEFSLRGGILDVFPAGASQPVRIDMFGDEIESL
RHFDTETQRSGESLLRLDFHPASELPLDSASVARFRTNWRELFGPKAVEDALYVSISEGR
RHPGAEHYLPLFTEAMETIFDYLPNASVSLDHQAEAAVAARFELIADHYAERRLPPRPGE
PIFRPIPPGMLYLDREAWEAALGKGPCFAFSPFTKPDGGAAGIEIGGRPAPILTGQQVPA
FEALGELKTKWAESGRTILLAAWSFGSRERLTLMLKEHGVGPVRPVVSADEARALPPGTI
ALAVLPLERGFLTDRLAVVAEQDLLGSRIARPPKRKRRADQFIADATEIEAGDLVVHQDH
GIGRYEGLETVTVNGAAHDCLKLIYDGGDKLFLPVENIDLLSRFGQEGDGVTLDKLGGAS
WQARKAKAKNRIQDMAAGLIRLAAERKMREAPLLAADDGAFAEFCARFPYTETEDQAKAI
ADVMEDFATGRPMDRLICGDVGFGKTEVALRAAFIAAMAGSQVAVVVPTTLLARQHFRSF
SARFEGLPIKVAQLSRLVTAKEAAQVKAGLASGEISIVVGTHAVMAQGISFSDLGLLIVD
EEQHFGVKHKERLKELKADVHVLTLTATPIPRTLQLALTGVRDLSLITTPPVDRLAVRTF
IMPFDSLVIKEAIAREKFRGGQIFCVVPRIEDLEPMAARLREIVPDLRTVMAHGRLAPTE
LERVMTEFGEGKYDVLLATNIVESGLDMPAVNTLIIYRADMFGLAGLYQLRGRVGRGKQR
GYAYLTWPPHHRLSAASEKRLEVMQTLDTLGAGFTLASHDLDLRGAGNLLGNEQSGHIRE
VGIELYQQMLEDAVNDLRAQHKDAQKIERDWTPNINLGLPVLIPETYVADLPIRLGLYRR
IGGLASDAESEALAAELVDRFGPIPAEVENLLSVVALKRACREANVEKLDAGPKGMVVSF
RKNDFSNPAGLIRWIGTKGGLVKLRPDQKLAMVRDMDVTARMAYARDLLTNLVKLVKTPE
A
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
atgatcccggtttacggcgccccggagggcgtggatgcgttggtgctggtgcgtcggctg
ggcgagcatgacgggccggttttgcatgtggcgcgcgatgatgcgcgcttggcggcgctg
gcggaggagatcgggtttttcgggcctgagatcgaggtgatatcgctgccggcctgggat
tgtctgccctatgaccgggtttcaccgaatggcgggattgtcgcggagcggatttcggcg
ttgagccggttgcaggcggaaccgggcaagaagcggattgtgctgacgacggtgaacgcc
gccttgcagaaggtggcgccgcgcagcgcgctggcgggggcggggctgagcctggccaag
ggcgagcaggtttcgctgagcgatgtggcgagcttcctggaggctgacggctatcggcgc
accgggatggtgatggaggccggcgagttcagcctgcgcggcggcattctggatgtgttt
ccggccggggcttcgcagccggtgcggatcgacatgttcggagacgagatcgagagcctg
cggcatttcgataccgagacccagcgctcgggtgaatcgctgctgcggctggatttccac
ccggcctcggaattgccgctggatagcgcctcggtggcgcggtttcgcaccaattggcgg
gagctgtttgggccgaaggcggtggaggatgcgctttacgtctccatctctgaggggcgg
cgccatcctggggcggagcattatctgccgttgtttaccgaggcgatggagacgatcttt
gattatctcccgaacgcctccgtcagcctggaccatcaggccgaggcggcggtggcggcg
cggtttgagctgatcgccgaccattatgccgagcgccggctgccaccgcgcccgggcgag
ccaattttccggccgatcccgccagggatgctgtatcttgaccgtgaggcctgggaggca
gcgctcggcaaaggcccgtgcttcgccttctcgcccttcaccaagccggatggcggggcg
gcgggcatcgagatcggcggccgcccggcgccgattctcaccggccagcaggttccggcc
ttcgaggcgctgggtgagctgaaaaccaaatgggcggagagcgggcggaccattctgctc
gccgcctggagtttcggctcgcgcgagcgcctcacgctgatgctcaaggagcacggggtt
ggtcccgtgcggcctgtggtttcggcggacgaggcccgcgctttgccgccggggaccatc
gcgctcgccgtgctgccgctggagcgtggctttctcacggatcgtctggcggtggtggcg
gagcaggatctgctcggcagccgcatcgcccgcccgccaaagcgcaagcgccgggcggat
cagttcatcgccgatgcgaccgagatcgaggccggggatctggtggtgcatcaggatcac
ggcattggccgctatgaggggctggagaccgtcaccgtcaacggcgcggcgcatgactgc
ctgaagctgatctatgatggcggggacaagctgttcctgccggttgagaatatcgatctg
ctctcgcgcttcggccaggaaggtgacggtgtcacgctggacaaattgggtggggcctcc
tggcaggcgcgcaaggcgaaggcgaagaaccgcatccaggatatggcggccgggctgatc
cggctcgcggcggagcgcaagatgcgcgaggcgccgttgctggccgccgatgacggcgcc
ttcgcggaattctgtgcgcgtttcccttataccgagaccgaggaccaggcgaaggcgatc
gccgatgtgatggaggatttcgccaccggccggccgatggaccggctgatctgcggcgat
gtcggcttcggcaagaccgaggtggcgctgcgggccgccttcatcgcggcgatggcgggc
tcccaggtggcggtggtggtgccgaccacgctgctggcgcgccagcatttccgctccttc
tccgcgcgtttcgagggcttgccgatcaaggtggcgcagctctcaaggctggtgacggcc
aaggaagcggcgcaggtgaaagccgggctggcttcgggcgagatttccattgtcgtcggc
acccatgcggtgatggcgcaggggatttccttctcggatctcggcctgctgatcgtcgat
gaggagcagcatttcggggtgaagcacaaagaacggctgaaggagctgaaggccgatgtg
catgtgctgacgctgaccgccacgccgatcccgcgcacgctgcagctggcgctgaccggg
gtgcgcgacctatctctgatcaccaccccgccggtggaccggctggcggtgcgcactttc
atcatgccctttgattcactggtgatcaaagaagccatcgcccgcgagaaattccgcggc
gggcagattttctgcgtggtgcctcggatcgaggacctggagccgatggcggcgcggctg
cgcgagatcgtgccggatctgcgcacggtgatggcgcatggaaggctggcgccgaccgag
ctggaacgggtgatgaccgagttcggtgaaggcaagtacgatgtgctgctggccaccaac
atcgtggaatccggcctcgacatgccggcggtgaacacgctgatcatttaccgggcggat
atgttcgggctggccgggctgtatcagctgcgcggccgcgtcgggcgtggcaagcagcgt
ggctatgcctatctcacctggccgccgcatcaccggctctcggccgcctccgagaagcgg
ctggaggtgatgcagacgctggacacgctgggggcgggcttcaccctggcgtcgcatgac
ctggatctgcgcggggcgggcaatctgctcggcaatgagcaatccggccatatccgcgag
gtcggtattgagctgtatcagcagatgctggaggatgcggtgaatgatctgcgcgcccag
cataaggatgcgcagaagatcgagcgggattggacgccgaacatcaatctcggcctgccg
gtgctgatcccggaaacctatgtggcggatctgccgatccggctcgggctgtaccggcgc
attggcgggcttgcctcggatgccgagagtgaggcgctggcggcggagctggtggaccgg
ttcgggccgatcccggcggaggtggaaaacctactctcggtggtggcgctgaagcgcgcc
tgccgtgaggcgaatgtggagaagctggatgccgggccgaaaggcatggtggtcagcttc
cgcaagaatgatttttccaaccccgccgggctgatccgctggatcggcaccaaaggcggt
ctggtgaagctgcgcccggaccagaagctggcgatggtgcgcgatatggatgtaacggcc
cgcatggcctacgcccgcgatttgctgaccaatctggtcaagctggtgaaaacccccgag
gcctga
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integrated database retrieval system
