Acidovorax carolinensis P4: CBP36_13050
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Entry
CBP36_13050 CDS
T04962
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
acip
Acidovorax carolinensis P4
Pathway
acip03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acip00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CBP36_13050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acip03019
]
CBP36_13050
03016 Transfer RNA biogenesis [BR:
acip03016
]
CBP36_13050
Enzymes [BR:
acip01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CBP36_13050
Messenger RNA biogenesis [BR:
acip03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CBP36_13050
Transfer RNA biogenesis [BR:
acip03016
]
Prokaryotic type
tRNA degradation factors
CBP36_13050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
ART59641
UniProt:
A0A240UDR2
LinkDB
All DBs
Position
complement(2809545..2811869)
Genome browser
AA seq
774 aa
AA seq
DB search
MYIKKNTPDAAAAHLSDEIEGSVQGHRDGHGFVIRDDGEGDIYIPPNEMRAVLHKDRVRV
RIVRQDRRGRPEGRVVEIIERPPQPLIGRLLQESGVWLVAPEDKRYGQDVLIPKGATGAA
KPGQVVVVELTEPPALFGQPVGRITEVLGEVDDPGMEIEIAVRKYGVPHEFSAECLAQAK
ELPDKVRTQDKRHRVDLTDVPLVTIDGEDARDFDDAVYCEPAKVGRSKGWRLLVAIADVS
HYVETGSAIDIDAYDRATSVYFPRRVIPMLPEKLSNGLCSLNPEVERLCMVCDMLVTAKG
EVQAYQFYPAVMYSHARFTYTEVAAILANTRGPEASKRKDRVKDLINLHDVYRALLVARR
ERGAVDFETTETQIICDENGRIEKIVPRTRNDAHKLIEEAMLAANVCSADFIAQGGQPGL
FRVHEGPTPEKQEILRGYLKAMAVGMTIGDNPHPSEFQAIAEATKDRPDAQQIHTMLLRS
MQQAIYTPVNSGHFGLAFDAYTHFTSPIRRYPDLLVHRVIKAILGKSKYKLPSLPTPGEA
HAKLAKRLAARVAAPGTKPRQDVAPPSRDTQAWEAAGLHCSANERRADEASRDVEAWLKC
KYMREHLGEEYSGVVSAATSFGIFVTLDAMYVEGLVHITELGGEYFKFDEARQELRGERT
GIRYSIGTRVRVQVSRVDLDGRKIDFRLIREGEELLGRALKDKGVAPQSDGARKAGGRSA
GRQRAPAPEMSATERASMTREQAARSPAKAKSTAKKSATNGNAGKSKGRKPRRS
NT seq
2325 nt
NT seq
+upstream
nt +downstream
nt
ttgtatatcaaaaaaaacacccccgacgcggccgctgcacatctgtcggacgagattgaa
ggcagcgttcaggggcaccgtgacggccatggattcgtcattcgcgatgatggcgaaggc
gacatctacatcccccccaatgaaatgcgcgccgtgctgcacaaggaccgcgtgcgcgtg
cgcatcgtgcgccaggaccgccgcggccgacccgaggggcgcgtggtggaaatcattgaa
cgcccgccgcaaccgctgatcggccggctgctgcaggaaagcggtgtctggctggtggcc
cccgaggacaagcgctacgggcaggatgtgttgatccccaagggcgccaccggcgcagcc
aagccggggcaggtggtggtggtcgagttgaccgagcccccagcgctgtttggccagccc
gtcgggcgcatcaccgaggtgcttggcgaggtggacgacccgggtatggagatcgaaatt
gcagtgcgcaaatatggcgtgccgcacgagttctctgccgaatgcctggcgcaggcgaaa
gagctgcccgacaaggtgcgcacgcaggacaagcggcaccgcgtcgacctgaccgatgtg
cccctggtcaccatcgatggcgaagacgcgcgcgacttcgacgacgccgtctattgcgag
cctgccaaggtgggtcgcagcaagggctggcgcctgctggtggccattgccgacgtgagt
cactatgtggagaccggcagcgccatcgacatcgacgcctacgaccgcgccaccagcgtg
tatttcccgcgtcgcgtgatccccatgctgcccgagaagctgagcaacggtctgtgctcg
ctcaaccccgaggtggagcgcctgtgcatggtctgcgacatgctggtcaccgccaagggt
gaggtgcaggcctaccagttctatccagccgtgatgtacagccatgcccgcttcacctac
accgaggtggcggccattctggcgaatacccgcgggcccgaggccagcaagcgcaaggac
cgggtcaaggacctgatcaatcttcacgacgtgtaccgtgcgctgctggtggcacggcgt
gaacgcggagcggtggactttgaaaccaccgagacgcagatcatctgcgacgagaacggc
cgcatcgaaaagatcgtgccgcgcacccgcaacgatgcccacaagctgattgaagaagcc
atgttggcggccaacgtgtgcagcgccgacttcattgcgcagggcggccagccgggcctg
tttcgtgtgcacgaaggccccacacccgagaagcaggaaattttgcgcggctacctcaag
gccatggcggtgggcatgacgattggcgacaacccccatccgtcggagtttcaggcgatt
gccgaggccaccaaagaccggcccgacgcgcagcagatccataccatgctgctgcgctcc
atgcagcaggccatctacacgccggtcaacagcggtcactttggcttggcattcgatgca
tacacgcacttcaccagccccatccggcgctaccccgatctgctggtgcaccgtgtcatc
aaggccattttgggcaagagcaaatacaagctgccctcgctgcccaccccgggcgaggcg
catgccaagctggccaagcgtctggcggcccgcgtggccgcgccgggcaccaagccgcgc
caggatgtggcacctcccagccgcgatacgcaggcctgggaggccgcgggcctgcactgc
agcgccaatgagcgccgcgccgacgaggccagccgtgatgtcgaggcctggctcaagtgc
aagtacatgcgcgagcacctgggcgaggaatacagcggcgtggtcagcgcggccacgagc
ttcggcatcttcgtgacgctggatgccatgtatgtggaaggcctggtgcacatcaccgag
ctgggcggcgaatacttcaagttcgacgaagcgcgccaggagttgcgtggcgaacgcacg
ggcatccggtattcgattggcacgcgggtgcgcgtgcaggtcagccgcgtggatctggac
gggcgcaagatcgacttccgcctgatacgcgagggcgaggaactgctgggccgtgcgctc
aaggacaagggcgtggcgccgcaatcggatggcgcgcgcaaggcgggtgggcgctcggcg
ggccgccagcgtgcaccggcgcccgagatgtctgccactgagcgcgcctcgatgacgcgg
gagcaggccgcgcgctctccggccaaggcaaagtcaacggccaagaagtccgccaccaac
ggcaatgccggcaaaagcaagggccgcaagccgcgccgcagttga
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