Acidovorax sp. DW039: ACDW_05230
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Entry
ACDW_05230 CDS
T10243
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
aciq Acidovorax sp. DW039
Pathway
aciq03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aciq00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ACDW_05230 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aciq03021
]
ACDW_05230 (rpoC)
03400 DNA repair and recombination proteins [BR:
aciq03400
]
ACDW_05230 (rpoC)
Enzymes [BR:
aciq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ACDW_05230 (rpoC)
Transcription machinery [BR:
aciq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ACDW_05230 (rpoC)
DNA repair and recombination proteins [BR:
aciq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ACDW_05230 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
BEU94818
LinkDB
All DBs
Position
581884..586116
Genome browser
AA seq
1410 aa
AA seq
DB search
MKSLLDLFKQFTPDEHFDAIRIGMASPEKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIDLAAPCAHIWFLKSL
PSRLGLVLDMTLRDIERVLYFEAYVVTDPGMTPLKKFSIMSEDDYDAKRKEYGDEFVAKM
GAEGIKDLLESIDIDLSIEKLRGDLTGSEVKVKKNAKRLKVLEAFKKSGIKPEWMVLEVL
PVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNSRLRRLLELKAPEIIARNEKRMLQEA
VDSLLDNGRRGKAMTGANKRALKSLADMIKGKSGRFRQNLLGKRVDYSGRSVITVGPTLK
LHQCGLPKLMALELFKPFIFSRLEAMGIATTIKAAKKEVESGTPVVWDILEEVIKEHPVM
LNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSVEAQMEART
LMLASNNVLFPASGEPSIVPSQDVVLGLYYATRDRINGKGEGLVFADTGEVQRALDAGQV
ELAARITVRMTEWTKDKETGEFVPSTSLVETTVGRALLSEILPKGLPFSNMNKALKKKEI
SRLINVSFRKCGLKETVVFADKLLQNGFRLATRAGISICIDDMLVPPQKVGIIERSEKEV
KEIEQQYVSGLVTSGERYNKVVDIWGKAGDEVSKVMMAQLSKQKVLDRHGKEVDQESFNS
IYMMADSGARGSAAQIRQVAGMRGLMAKPDGSIIETPITANFREGLNVLEYFISTHGARK
GLADTALKTANSGYLTRRLVDVTQDLVVTEDDCGTANGSLMRAIVEGGEVIESLRERILG
RTAAEDILHPENRSVLVPAGTMLEEDLIEEIEAVGVDEVKVRTALTCETRYGLCSKCYGR
DLGRGGLINLGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAIASSVEAKSNGVIGFN
ATMRYVSNTKGELVVIARSGEIIIHDEHGRERERHKVPYGATLTVKADQAIKAGTILANW
DPLTRPIITEFAGQVKFENVEEGLTVAKQVDEVTGLSTLVVIDPKRRGAAKVVRPQVKLI
DAQGQEVKIPGTDHSVTIGFQVGALIQVRDGQDVGPGEVLARIPVEGQKTRDITGGLPRV
AELFEARTPKDKGTLAEMTGTISFGKETKGKIRLQITDPDGKVWEELIPKEKNILVHEGQ
VVNKGELIVDGPADPQDILRLLGIEELSRYIVDEVQDVYRLQGVKINDKHIEVIVRQMLR
RVVVENVGESNYIAGEQVERSEILNTNEALQAEGKIPATYSNLLLGITKASLSTDSFISA
ASFQETTRVLTEAAIMGKKDELRGLKENVIVGRLIPAGTGLAYHQARKAKDAMDEAERRA
IAEAEAAEMAASADDTEVESSASASDAAAD
NT seq
4233 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcgctactcgacctgttcaagcaattcacgccggatgagcatttcgatgccatc
cgcatcggcatggcttcgcccgagaagatccgttcgtggtctttcggtgaagtgaagaag
cccgaaaccatcaactaccgtacgttcaagcccgagcgcgacggcctgttctgcgccaag
atttttggtcccatcaaggactacgaatgcctgtgcggcaagtacaagcgtctcaagcac
cgcggcgtgatctgcgaaaagtgcggcgttgaagtcacacagaccaaggtgcgccgcgaa
cgcatgggtcacatcgacctggccgcgccttgcgcccacatctggttcctgaagtcgctg
ccttcgcgtctgggcctggtgctggacatgacgctgcgcgacatcgaacgcgtgctgtac
tttgaagcgtatgtggtgaccgaccctggcatgaccccgctgaagaagttcagcatcatg
tccgaggacgactacgacgccaagcgcaaggaatacggcgacgagttcgtggccaagatg
ggcgctgaaggtatcaaggacctgctggaatccatcgacatcgacctgtcgatcgagaag
ctgcgcggcgacctgaccggctccgaagtcaaggtcaagaagaacgccaagcgcctgaag
gtgctggaagcgttcaagaagtccggcatcaagccagagtggatggtgctggaagtgctg
cccgtgctgccaccggacctgcgtccgctggtgccgctggacggcggccgttttgcgacc
tccgacctgaacgacctgtaccgccgcgtcatcaaccgcaactcccgtctgcgccgcctg
ctggagctgaaggcccctgaaatcatcgcccgcaacgaaaagcggatgctgcaagaggct
gtcgattcgctgctggacaacggccgccgtggcaaggccatgacgggcgccaacaagcgc
gctctgaagtccctggccgacatgatcaagggcaagtcgggtcgcttccgccagaacttg
ctgggcaagcgcgtggactactccggtcgttccgtgattaccgtgggcccaacgctcaag
ctgcaccagtgcggtctgcctaagctgatggcgctggagctgttcaagcctttcatcttc
tcgcgcctcgaagccatgggcatcgcgacgacgatcaaggccgccaagaaggaagtcgaa
tccggcacccccgtggtgtgggacatcctggaagaggtcatcaaagagcaccctgtgatg
ctgaaccgtgcgcctacgctgcaccgtttgggcatccaggcctttgagcccatcctgatc
gaaggcaaggccatccagctgcaccccctcgtttgcgcggccttcaacgccgacttcgac
ggtgaccagatggctgtgcacgtcccgctgtcggtggaagcgcagatggaagcccgcacg
ctgatgctggcctccaacaacgtgctgttccccgcctcgggcgaaccctccatcgtgcct
tcgcaggacgtggtgctgggtctgtactacgccacccgtgaccgtatcaacggcaagggc
gaaggcctggtgtttgcggataccggcgaagtgcagcgtgccttggatgcgggccaggta
gaactggctgcgcgcatcaccgtgcgcatgaccgagtggaccaaggacaaggaaacaggc
gaattcgtgccttcgacctccctggtggaaaccactgtgggccgtgccctgctgtccgag
atcctgcccaagggcctgccgttctcgaacatgaacaaggcgctcaagaagaaggaaatc
tcgcgcctgatcaacgtctccttccgcaagtgcggtctgaaggaaacggtggtgtttgcc
gacaagctgctgcaaaacggtttccgtctggccacccgtgccggtatctccatctgtatc
gatgacatgctggtgcctccacaaaaggtcggcatcatcgagcgctccgagaaggaagtg
aaagagatcgaacagcagtacgtgtccggtctggtgacttctggcgagcgctacaacaag
gtggtggatatctggggcaaggccggtgacgaagtgtccaaggtgatgatggcccagctg
tccaagcaaaaggtgctggaccgccacggcaaggaagtggaccaggagtccttcaactcc
atctacatgatggccgactccggtgcccgcggctctgccgcccagatccgtcaggtggcc
ggtatgcggggtctgatggccaagccagacggctcgatcatcgaaacgcctattaccgcg
aacttccgcgaaggtctgaacgtgttggagtacttcatctccacccacggtgcccgtaag
ggtctggccgatacggcgctgaagaccgccaactccggttacctcacccgccgtctggtg
gacgtgacgcaggatctggtcgtgaccgaggacgattgcggcactgccaatggttcgctg
atgcgcgccattgtggaaggcggtgaagtgatcgaatcgctgcgcgaacgtatcctgggc
cgcaccgctgccgaagacatcctgcaccccgaaaaccgctcggtgctggtgcctgccggc
accatgctggaagaagacctcatcgaagagatcgaggccgtgggcgtggacgaagtcaag
gtgcgcacggcgctgacctgcgaaacccgctacggtctgtgctccaagtgctatggccgc
gacctgggccgcggtggtctgatcaacctcggcgaagccgtgggtgtgatcgctgcccag
tccatcggtgaacccggcacgcagctgacgatgcgtaccttccacatcggtggtgcggct
tcgcgtgctgccatcgcttcgagcgtggaagccaagtccaacggcgtgatcggcttcaac
gccacgatgcgctacgtgagcaacaccaagggtgagctggtggtgattgcccgttcgggt
gaaatcatcatccacgacgagcatggccgcgagcgtgagcgccacaaggtgccttacggt
gcgacgctgacggtgaaggccgaccaagccatcaaggccggcacgattctggccaactgg
gatccgctgacccgccccatcattaccgagttcgccggtcaggtgaagttcgagaacgtg
gaagaaggcctgacggtggccaagcaggtcgacgaagtgaccggtctgtccacgctggtg
gtgatcgatccgaagcgccgtggtgccgccaaggtggtgcgtccccaggtgaagctgatc
gacgcgcaaggccaggaagtgaagatccccggcaccgaccactcggtgacgatcggcttc
caggtgggcgctctgatccaggtgcgcgacggccaggacgtgggccccggcgaagtgctg
gcccgtatccctgtcgaaggtcagaagacccgcgacattaccggcggtctgccccgcgtg
gccgagctgttcgaagcccgtacacccaaggacaagggcacgctggccgagatgaccggc
acgatctccttcggtaaggaaaccaagggcaagattcgcctgcagatcaccgaccccgat
ggcaaggtgtgggaagagctcatccccaaggaaaagaacatcctggtgcacgaaggccag
gtggtcaacaagggcgagctgattgtggacggtcctgccgatccacaggacatcctgcgc
ctgctgggtatcgaagagctgtctcgctacatcgtggacgaagtgcaggacgtgtaccgc
ttgcaaggcgtgaagatcaacgacaagcacatcgaggtgatcgttcgccagatgctgcgc
cgcgttgtggtcgagaacgtgggcgagtccaactacattgctggcgagcaggtcgagcgc
tccgagatcctcaacaccaacgaggctctgcaggctgaaggcaagatccccgcgacctac
agcaacctgttgctgggtatcacgaaggcatcgctgtccaccgactcgttcatctctgcc
gcatcgttccaggaaaccactcgcgtgctgaccgaagctgcgatcatgggcaagaaggac
gagctgcgcggtctgaaggaaaacgtgatcgtgggtcgtctgatccctgcgggtaccggc
ctggcctaccaccaggcacgcaaggccaaggacgccatggacgaggccgagcgccgcgcc
attgccgaagccgaagccgccgagatggcagcctctgcagacgacacggaagtggaaagc
agtgcttccgcttcggacgctgcagcagactga
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