Acidovorax sp. DW039: ACDW_16110
Help
Entry
ACDW_16110 CDS
T10243
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
aciq Acidovorax sp. DW039
Pathway
aciq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aciq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACDW_16110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aciq03019
]
ACDW_16110
Enzymes [BR:
aciq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ACDW_16110
Messenger RNA biogenesis [BR:
aciq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ACDW_16110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
BEU95906
LinkDB
All DBs
Position
1810698..1812182
Genome browser
AA seq
494 aa
AA seq
DB search
MTSSFSNLSLAEPLARAVAEMGYESMTPIQAQAIPVVLTGQDVMGAAQTGTGKTAAFSLP
LLQRLLKHENSSTSPARHPVRALVLLPTRELADQVAQQIALYAKYTKLRSTVVFGGMDMK
PQTIELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSY
LPKQRTTLLFSATFSPEIKRLASSYLQDPITIEVARPNETAATVEQRFYSAGDDDKRRAI
HHVLRSRGIKQAFIFVNSKLGCGRLARSLEREGLKTAALHGDKSQDERLKALEAFKQGEV
DLLVCTDVAARGLDIKDVPAVFNFDVPFNAEDYVHRIGRTGRAGASGLAVTLVSGSDARL
VTDIEKLIKKKIELETLQLEDERPRESRRSSRDSDYGDAREAGAFRREPRDSREPRESRE
GRESRDYRGFRPAAVSRDPFFSKPYEPSATDTPAAWEATAKTPVRSGISANIKPKRKVAA
LFKAAVRETSSEQS
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atgacaagttctttttccaatctatcgctggccgagccgctagcgcgtgccgtggccgaa
atgggctacgagtccatgacgcccatccaggcccaggccatccccgtcgtgctgacgggg
caagacgtgatgggcgccgcccagacgggcacaggcaagacggcggcgttctcgttgcca
ctgctgcagcgcctgctcaagcacgaaaacagttcgacatcgcccgcacggcaccctgtg
cgtgcgctggtgctgctgcccacgcgtgagctggccgaccaggtggcccagcagattgcg
ctgtacgccaagtacaccaagctgcgcagcaccgtggtgtttggcggcatggacatgaag
ccccagaccatcgaactgaaaaaaggcgttgaggtgctggtggccacgccaggccgcctg
ctggaccacatcgaggccaagaacgcggtgctcaaccaggtggaatacgtggtgctggac
gaggcagaccgcatgctggacatcggctttttgccggatctgcagcgcatcctgtcgtac
ctgcccaagcagcgcaccaccttgctgttcagcgccactttctcgcccgagatcaagcgc
ctggccagcagctacctgcaagaccccattaccatcgaagtggcccgccccaacgagacg
gcggctacagtggagcagcgcttttacagcgcgggcgatgacgacaagcgccgggctatc
caccatgtgttgcgctcgcgtggcatcaagcaggccttcatttttgtgaacagcaagctg
ggttgcggccgtctggcacgcagcctggagcgcgaaggcctgaagaccgctgccctgcac
ggcgacaagagccaggacgagcgcctcaaggccctggaagccttcaaacaaggcgaggtg
gacctgctggtgtgtacggatgtggcggcccgcggcctcgacatcaaggatgtacccgcc
gtcttcaactttgacgtgccgttcaatgccgaagactacgtgcaccgcatcggtcgtacg
ggccgcgcaggtgcctccggtctggccgtaacgctcgtgtccggcagcgatgcgcggctg
gtgacggacattgaaaagctgatcaagaaaaagatcgagctggagacgctgcagttggaa
gatgagcgcccgcgtgaaagccgccgctcgtctcgcgacagcgattacggcgatgcgcgg
gaggctggcgctttccgccgcgagccgcgtgattcgcgggagccacgcgaaagtcgtgaa
gggcgtgagagtcgcgattaccggggtttccggcccgccgccgtatcgcgcgatccgttt
ttcagcaagccctacgaacccagtgctaccgacaccccagcggcatgggaagccacggcc
aagacacccgtgcgcagcggcatctcggccaacatcaagcccaagcgcaaggtggcggcc
ttgttcaaggcggcggtgcgcgagacatccagcgagcagagctga
DBGET
integrated database retrieval system
