Acidovorax sp. DW039: ACDW_21230
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Entry
ACDW_21230 CDS
T10243
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
aciq Acidovorax sp. DW039
Pathway
aciq03030
DNA replication
aciq03430
Mismatch repair
aciq03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
aciq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ACDW_21230 (dnaE)
03430 Mismatch repair
ACDW_21230 (dnaE)
03440 Homologous recombination
ACDW_21230 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aciq03032
]
ACDW_21230 (dnaE)
03400 DNA repair and recombination proteins [BR:
aciq03400
]
ACDW_21230 (dnaE)
Enzymes [BR:
aciq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
ACDW_21230 (dnaE)
DNA replication proteins [BR:
aciq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
ACDW_21230 (dnaE)
DNA repair and recombination proteins [BR:
aciq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
ACDW_21230 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
RMI2
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
BEU96418
LinkDB
All DBs
Position
2410598..2414134
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AA seq
1178 aa
AA seq
DB search
MYVHLRLHTEFSVVDGTTRIDEVVKAAAADGQPALAITDLNNLFGAIKFYKEGRGKGVKP
LLGAEIFLEGEAGADPSRVLVLVQSKQGYLNLSELLARAWTKNVVKNLAVCTWAWLEELS
EGLIALSGAQAGPVGQALLKGDEQGAADTALRLARIFTHRFYIELQRAGRVDDEAHVAAA
VPLAARLNLPVVATHPIQFLTPDDFEAHEARVCIAGGEILANPKRVRRFTREQYFKSAQQ
MQTLFADVPSALANTGEIAKRCSLTLVLGKPRLPDFPTPNGMPIDEYFRFASFQGLDERL
AHLFPDEAEREKQRPRYVERLEFELGTILKMGFPGYFLIVGDFIQWAKNNGCPVGPGRGS
GAGSLVAYALKITDLDPLQYNLLFERFLNPERVSMPDFDIDFCQSNRDRVIDYVKDKYGK
NAVSQIATFGTMAAKAAIRDVGRVMDMSYTFCDGISKLVPGKPGMSYTLAYPPEVKKEGD
KNNYALELEPMLYERVRKEEDVKTVIEMAQKLEGMTRNIGMHAGGVLIAPGKLTDFCPLY
QQPGSESAVSQYDKDDVEAIGLVKFDFLGLATLTILEIAREFIMKRHKGQENFAFENIPL
DDAPTYRLFSDGKTEAVFQFESRGMQGMLKEARPSRLEDLIALNALYRPGPMDLIPTFVN
RKHGKEPVEYPHPLVEPVLAETYGIMVYQEQVMQTAQVLGGYSLGGADMLRRAMGKKKAE
EMAEHRAIFRKGAAEKGIDQDKADEVFDLMEKFAGYGFNKSHAAAYSLLAYHTGWLKVHY
TAEFFCANMTVEMDDTDKLKVLYEDAVKNFGLSFEPPDINRGFYRFEPVTDKVIRYGLGA
IKGTGQQAIEAMVAAREGRGEGPRGSTKGPFKSLFDFCVRVDKGRMNKRTVEALIKAGAF
DSLNMNRAALVASIDRAFDFAAATLANVNQGGLFDMMGDDAHGSSTQEPELVDAIPWGIK
ERLTQEKTAVGFYLSGHLFDEVSAEVRKFVRTQIDELMDSREPQVLAGIISDFRVINGQR
GKLGLFKLDDKSGMIEASADEALLNTYRNQLKEDEFVVVMGRLQMDHFSGGLRVKVQQVW
DMAGARCRFGKYLHILMGDRQPDVHRLVSEFPPHREELEEGDVFHGLRVRMGVKCQSEHG
PAVAELQLGEGSRFYPTDAALAAWSAQAGSGTTSVVYD
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atgtacgttcacttgcgcctgcacacagagttctccgtcgttgacgggaccacccgtatc
gatgaggtggtcaaagccgccgcggccgatgggcaaccggcccttgccatcaccgatctc
aataacctttttggggccatcaagttctataaagagggccgcggcaagggcgtgaagccc
ctgttgggcgctgagatttttctggagggtgaagcgggtgccgacccttcgcgcgttctt
gtgctggtgcagagcaagcaaggctatctgaatctctcagagttgctggccagggcctgg
accaagaacgtggtcaagaaccttgccgtgtgtacctgggcatggctggaggaactttca
gaagggctcattgccctgtctggtgcacaggccgggcctgtggggcaagcccttttgaag
ggcgatgagcaaggcgctgcagataccgcgctgcgactggcccgtatattcacccaccgg
ttttacatagaactccaacgtgcaggccgggtggatgatgaggctcatgtagcagcggct
gttccattggcggcgcggttgaatttgccggtggttgccacccatcccattcagttcctc
acgcccgatgatttcgaagcccatgaggcccgcgtatgtatcgcagggggcgagatcctt
gcaaaccccaaacgggtgcgtcggtttacgcgagagcagtatttcaagtctgcacagcag
atgcagaccctgtttgcagacgttccgtctgcgcttgcgaatacgggggaaatcgccaag
cgctgtagtctgaccttggtgctgggcaaaccgcgcttgcctgattttccgacgcccaac
ggaatgcccatcgacgagtatttccggtttgcgtcattccaggggctggacgaacgcctt
gcgcacctgtttcctgacgaagcggagcgtgagaagcagcgcccccgttatgtggagcgt
ctggagtttgagttgggcaccattctcaagatggggttccccgggtacttcctcatcgtg
ggtgacttcattcagtgggccaagaacaatggttgccctgtcgggcctggacgggggtct
ggagcaggttcgcttgtggcgtatgcactgaaaatcacggacctggacccgttgcaatac
aacttgctgttcgagcgctttctgaaccccgagcgggtttcgatgcctgacttcgatatc
gacttttgccagtccaaccgcgaccgcgtgatcgactatgtgaaggacaagtacggcaag
aacgccgtcagccagatcgcgaccttcggcaccatggctgccaaggctgcgatacgggac
gtgggccgcgtcatggacatgagctacacgttctgtgatggcatctccaagctggttcct
ggcaagccgggcatgtcctacaccttggcttatccgcccgaggtgaagaaggaaggggac
aaaaacaactacgccctggagctggaacccatgctgtacgagcgcgtacgcaaggaggaa
gacgtcaagaccgtcatcgagatggcgcagaagctcgaaggcatgacccgcaacattggc
atgcacgcgggcggtgtgttgatcgctcccggcaagctgacggatttttgtccgctttat
cagcagcccggcagtgagtcggctgtaagccagtacgacaaggatgacgtggaggctatc
ggcctcgtgaagttcgacttcttgggcttggccacgctgacgatcctggaaatcgctcgc
gagttcatcatgaagcgccacaaggggcaggagaactttgcgttcgagaacatccccctg
gacgatgcgcccacctacaggctcttttctgatggcaagacggaagctgtgttccagttt
gaaagccgtggcatgcagggcatgctcaaggaagcgcgccccagccgtctggaggacctg
attgccctgaacgcgttgtaccgtccgggtccgatggacctgattcctacgttcgtgaac
cgcaaacacggcaaggaacctgtggaatacccccacccgctggtcgagcccgtgctggct
gaaacctacgggatcatggtgtaccaggaacaggtgatgcaaacggctcaggtgctggga
ggctacagtcttggtggtgccgacatgctgcgccgagccatgggcaagaaaaaggccgaa
gagatggcggagcaccgcgccatcttccgcaagggcgccgcggagaagggtattgatcag
gacaaggccgacgaggtttttgacctgatggaaaagtttgcgggctacggcttcaacaag
tcgcacgctgcggcctattccctgttggcctatcacacaggctggctgaaggtgcactac
acggcggagttcttctgcgccaacatgacggtggaaatggatgacaccgacaagctcaag
gtgctgtatgaagatgccgtcaaaaacttcggcctgagcttcgagccgcccgatatcaac
cgtggcttctatcgtttcgagccggtgaccgacaaggtcatacggtacggcctgggggcg
atcaaaggtacgggtcaacaggcgattgaagccatggtggcggcgcgtgaaggccgtggc
gaagggccgcgcggctccaccaaaggaccattcaagagcttgtttgacttttgcgtgcgg
gtggacaaagggcgcatgaacaagcgcactgtggaagcactgatcaaggcgggcgctttt
gattcactcaacatgaaccgggccgcgttggttgcatccatcgaccgagccttcgacttc
gccgcggccaccttggccaacgtgaaccagggtggtctgtttgacatgatgggagacgac
gcccatggctccagcacacaggagccggagctggttgatgcgattccctggggaatcaag
gaacgactgacccaggagaaaaccgcggtaggtttctacctgtccggccatttgtttgat
gaggtgtctgctgaggtccgcaaatttgtgcggacacagatcgatgagttgatggacagc
cgcgagccacaggtgctcgccggcatcatcagcgatttccgggtgatcaacggccaacgc
ggcaagctgggcttgttcaagctggatgacaagtccggaatgattgaggcgtccgccgac
gaagccctgttgaacacctaccgcaatcaactcaaagaagacgagtttgtggtcgtgatg
gggcgcctgcagatggaccacttcagcggagggcttcgcgtgaaggtgcagcaggtgtgg
gatatggcaggagcgcgttgtcgctttggcaagtacctgcacatcctcatgggtgaccgc
caacccgatgttcatcggctggtgtccgaatttcctcctcatcgagaagaactcgaagaa
ggcgatgtcttccacgggctgcgtgtgcgcatgggagtcaagtgccaatccgaacacggc
cctgcagtggcagagctgcagttgggcgagggcagccggttctaccccacggatgctgcc
ttggcggcatggagtgcgcaggcgggatcgggcacgacctccgtggtctacgactag
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