Acidovorax sp. DW039: ACDW_28400
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Entry
ACDW_28400 CDS
T10243
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
aciq Acidovorax sp. DW039
Brite
KEGG Orthology (KO) [BR:
aciq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
aciq03009
]
ACDW_28400 (rlmD)
Enzymes [BR:
aciq01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
ACDW_28400 (rlmD)
Ribosome biogenesis [BR:
aciq03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
ACDW_28400 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
RrnaAD
Methyltransf_25
TRM5-TYW2_MTfase
Methyltransf_11
Methyltrans_SAM
Methyltransf_23
TPMT
MTS
PCMT
Methyltransf_12
TRAM
Motif
Other DBs
NCBI-ProteinID:
BEU97135
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Position
complement(3206383..3207846)
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AA seq
487 aa
AA seq
DB search
MSEQTEPLSPPEIPDTSDQPVLPEGWLAVQSMDLDAQGVARKPDGKVVFIDGALPFEWVS
ANTHRKKNNWEQASLTDIHRESSQRVRPGCPHFGLHAGACGGCKMQHLDRRAQVAVKQRA
LEDNLWHLGKVKAETILRPIEGPAWGYRYRARLSVRHVIKKGVVLVGFHERKSRYVADME
VCPVLPPHVSAMLMPLRALIASMDARDTCPQIELACGDEVTALVLRHLEPLSADDLARLR
AFAEQHQVQWWLQPKGPDTVHLLDAGGPQLAYGLPDFGITMPFKPTDFTQVNPHINRVLV
SRALRLLDVQKHERVIDWFCGLGNFTLPLATQAREVLGIEGSEALVARSRENYKQNQSQR
AGGKALAATEFVARNLFEMTPAMLVADGQADKWLVDPPREGAFALAKALADIEQARRGAE
DAPPLPEGAHTWQAPKRIVYVSCNPATLARDAGLLVHLAGYRCVAAGMVNMFPHTAHVES
IAVFERD
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaacagacagaaccactctccccacctgaaattcctgacacttccgaccagccc
gtgctgcccgagggctggttggccgttcaatccatggacctcgacgcgcaaggcgtcgcc
cgcaagccggatggcaaggtggtgttcatcgatggcgctctgccgtttgaatgggtcagt
gctaacacccatcgcaaaaagaacaactgggagcaggccagcctcaccgacatacaccgc
gaatcgtcgcaacgtgtgcggcccggctgcccccactttgggctgcatgcaggcgcttgc
gggggctgcaagatgcagcatctggatcgccgggcccaggtggccgtcaaacaacgcgcg
ctggaggacaacctctggcacttgggcaaggtcaaggctgagaccatcctgcgccccatt
gagggccctgcctggggttaccggtatcgcgcccgtttgtccgtgcgccatgtgatcaaa
aagggtgtggtgctggtgggctttcatgagcgcaagagccgctatgtggccgacatggag
gtttgccccgtgctgccgccccacgtcagcgccatgctcatgcccttgcgtgcgctgatc
gccagcatggatgcgcgcgatacctgtccgcaaatcgagctggcctgtggtgacgaggtg
acggccctggtgttgcgccatctggagcccttgtcggccgacgatctggcccggctgcgt
gcgttcgcagagcagcaccaggtgcagtggtggctgcagcccaaggggccggacacggtg
cacctgctggacgctggcgggccgcagctggcttatgggttgcctgactttggcatcacc
atgcccttcaagcccacagacttcacgcaggtcaatccgcacatcaaccgtgtgctggtg
tcacgtgccttgcggttgctggatgtgcaaaagcacgagcgcgtcatcgactggttctgc
ggcctgggcaacttcaccctgccgctggccacccaggcccgtgaggtgctgggcattgag
ggcagcgaggccctggtggctcgctcgcgcgagaattacaagcaaaatcagtctcaaagg
gccggtggtaaagcgctggcagctactgaatttgtagcgcgaaacctctttgagatgacc
cccgccatgctggtggccgatgggcaggccgacaagtggctggtagaccctccgcgcgaa
ggcgcatttgcattggccaaggctctggcagacattgaacaggctcgccgtggtgcggaa
gatgccccccctctgcccgaaggggcccacacctggcaagcgcccaaacgcatcgtgtac
gtcagttgcaaccctgcaaccctggcgcgggatgccgggctgctggtgcatctggcgggg
taccgctgcgtggcggcaggcatggtcaatatgtttccgcacaccgcgcatgtggaaagc
attgcggtgttcgagcgcgactga
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