Acidovorax sp. DW039: ACDW_29610
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Entry
ACDW_29610 CDS
T10243
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
aciq Acidovorax sp. DW039
Pathway
aciq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aciq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACDW_29610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aciq03019
]
ACDW_29610
Enzymes [BR:
aciq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ACDW_29610
Messenger RNA biogenesis [BR:
aciq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ACDW_29610
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
P-loop_SecA
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
BEU97256
LinkDB
All DBs
Position
3343752..3345485
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AA seq
577 aa
AA seq
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MKFEELNLAPAILKAVLEQGYETPTPIQAQAIPAVLEGHDLLAGAQTGTGKTAAFTLPML
HRLAQGTAPKSKFGGKGIRALVLTPTRELAAQVEESVRDYGKYLDINSTVVFGGVGMNPQ
IDRIKRGVDVLVATPGRLLDLQQQGFLDLSTVEILVLDEADRMLDMGFIHDVKKVLALVP
KEKQSLLFSATFSDDIRELANSLLRNPQSIQVTPRNTTVQRITQVIHPVGRGKKKQVLLH
IIQQHNWSQVLVFTRTKFGANNVAEFLTKNGVSAMALHGNKSQSARTQALSGFKSGEIRA
LVATDIAARGIDIDDLPHVVNYEIPNVPEDYVHRIGRTGRAGATGEAVSLVCMDEEGFMM
DIERFTKQQIPVQMLEGFGPEPGEKAEPIAMGRQTIWGGAGKPPSREVMQAAAKAARTEM
MDRIRANKATQGQGGERGPRQPGNNNGNGQRSGRGPQNANTARASEGNGGNGQNRGRGRG
RPNQGEGNRYDDAQPPRMNAHLGTHSGHSNPGHRSSGHSSGQPDPMRTSVDSMAERGRRG
GGGYRGGNGGGNGGGYGGGGRGNGPRGSGGPRGSFNR
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttgaagaactgaatctggccccagccattctgaaggccgtgctcgagcaaggc
tacgagacgcccacccccattcaggcgcaggccattcctgcggtgctggaggggcatgac
ctcctggcaggggcacagacaggcacgggcaagacagctgcgttcacgctgcccatgctg
catcgcctcgcacaaggcacggcaccgaaaagcaagttcggcggcaaggggattcgggcg
ctggtcctgacccctacccgcgagctggcagcgcaggtggaagagtcggtgcgtgactac
ggcaagtacctcgacatcaactccaccgtggtgtttggcggcgtgggcatgaatccccag
atcgaccgtatcaagcgcggggtggatgtgctggtggccactccaggtcggctcctggat
ctgcaacaacaaggcttccttgacctttccacggtggaaatcctggtgctggacgaagcg
gaccgcatgctggacatgggattcatccacgatgtgaagaaggtgctggccctggtaccc
aaagaaaagcaaagcctgcttttctctgccaccttcagcgacgacattcgcgaactggcc
aattctctgttgcgcaatccccagagcatccaggtgactccgcgcaacacgaccgtgcag
cgcatcacacaggtgattcatccagttggccgcggcaagaaaaagcaggttctcctgcac
atcatccagcagcacaactggagccaagtactggtgttcacccgtaccaagtttggtgcg
aataatgtggccgaattcctgaccaagaatggcgtgagcgccatggcactgcacggaaac
aagagccaaagcgcacgcacccaggctttgtccggcttcaagagcggagagattcgcgcg
ctggttgctaccgacattgccgcacgtggcatcgacattgacgatctgcctcacgtcgtg
aactacgagattcccaacgtgccggaagactatgtgcaccgcatcggccgtacaggtcgc
gcgggcgctaccggtgaggccgtgagcctggtctgcatggacgaagaaggcttcatgatg
gacatcgagcgcttcaccaagcagcaaattccagtgcagatgctggaaggttttggccca
gaacccggagaaaaggcagaacccattgccatgggccgccagaccatctggggaggtgca
ggcaagccaccaagcagagaagtcatgcaagccgcagccaaagctgcgcgcacagaaatg
atggatcgcatccgcgcgaacaaggccacgcagggccaggggggcgaacgcggtccacga
caaccaggcaacaacaacggcaatgggcagcgctcgggccggggtcctcaaaatgccaac
accgcccgtgcaagcgaggggaatggcggtaacggtcaaaaccgcggtcgcggcagaggc
cgccccaaccagggtgagggcaatcgctatgacgacgcacagcccccacgcatgaatgct
cacctgggcactcacagcgggcacagcaatcctggccaccgcagctctggccattcatcc
ggtcagcctgacccgatgcgcaccagcgtggacagcatggccgagcgtggtcgtcgcggc
ggcggtggttaccgcggtgggaatggcggcggcaatggtggaggttacggcggtggagga
cgcggaaatggtcctcgcggctcaggaggcccacgcggctctttcaaccgttga
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