Acidovorax sp. DW039: ACDW_29990
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Entry
ACDW_29990 CDS
T10243
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
aciq Acidovorax sp. DW039
Pathway
aciq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aciq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACDW_29990 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aciq03021
]
ACDW_29990 (rho)
03019 Messenger RNA biogenesis [BR:
aciq03019
]
ACDW_29990 (rho)
Transcription machinery [BR:
aciq03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
ACDW_29990 (rho)
Messenger RNA biogenesis [BR:
aciq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ACDW_29990 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA_25
Spore_III_AA
S1CSD-TOTE-2
AAA
ResIII
Motif
Other DBs
NCBI-ProteinID:
BEU97294
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All DBs
Position
3392695..3393957
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AA seq
420 aa
AA seq
DB search
MHLNELKALHVSEVLKQAEELEIENTGRMRKQELMFAIIKKRAKAGEQVFADGVLEILPD
GFGFLRSPDTSFTASTDDIYISPSQVRRFNLHTGDMIEGEVRTPKDGERYFALTKLDKVN
GGPPEQNKHKVMFENLTPLFPKEQMRLERDIKGDENITGRIIDIIAPIGRGQRALIVAPP
KSGKTVMMQHIAHAITANNPDVHLMVLLVDERPEEVTEMQRTVKGDIIASTFDEPAARHV
HVAEMVIERAKRLVELKKDVVILLDSITRLARAYNNVVPSSGKVLSGGVDAAALQRPKRF
FGAARKVEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNCEIHLNRRLYEKRVFPAIEM
NKSGTRREELLLAPEILQKTRILRQFMYNMDEIESMELMIKNMKATKTNVDFFDMMRRGG
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgcacttaaacgaactcaaggcactgcacgtgtctgaagtcctgaagcaggccgaagaa
ctcgaaatcgaaaacacaggccggatgcgcaaacaggaattgatgtttgcgatcatcaag
aagcgcgccaaggcaggcgagcaggtatttgccgacggggtgctggaaatcctgcccgac
ggattcggctttttgcgcagcccagacaccagcttcacggccagcacggacgacatctac
atcagccccagccaggtgcgccgtttcaacctgcacaccggcgacatgatcgaaggtgaa
gtgcgcacacccaaggacggcgagcgctactttgccctgaccaagctggacaaggtcaac
ggcggcccacccgagcagaacaagcacaaggtgatgttcgaaaacctgacgcccctgttc
cccaaggaacagatgcggctggagcgcgacatcaagggcgacgagaacatcaccggccgc
atcatcgacatcattgctcccattggccgcggccaacgcgcactgatcgtggcgcccccc
aagagcggcaagacggtgatgatgcagcacatcgcccacgccatcacggccaataacccc
gacgtgcacctgatggtgctgctggtggacgagcgccctgaagaagtgacggaaatgcag
cgcacggtcaagggcgacatcattgcctccaccttcgacgaacccgccgcccgccacgtg
cacgtggccgaaatggtgatcgagcgcgccaagcgcctggtggagctgaagaaagacgtg
gtgatcctgctggactccatcacccgcctggcccgcgcctacaacaacgtcgtgccctcc
agcggcaaggtgctgtcgggcggtgtggacgccgccgcgctgcagcgccccaagcgcttc
ttcggcgcagcccgcaaggtggaagaaggcggttcgctcaccatcatcgccaccgcgctg
gtcgataccggcagccgcatggacgaagtgatcttcgaagaattcaaaggcacgggcaac
tgcgaaatccacctgaaccgccgcctgtacgaaaagcgcgtgttccccgccatcgagatg
aacaagagcggcacacgccgtgaagagctgctgctggcacccgagatcctgcaaaagacc
cgcatcctgcgccagttcatgtacaacatggacgagatcgagtcgatggagctgatgatc
aagaacatgaaggccaccaagaccaatgtggacttcttcgacatgatgcgcaggggcggc
tga
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