Acidovorax sp. DW039: ACDW_33710
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Entry
ACDW_33710 CDS
T10243
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
aciq Acidovorax sp. DW039
Pathway
aciq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aciq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACDW_33710
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aciq03019
]
ACDW_33710
03009 Ribosome biogenesis [BR:
aciq03009
]
ACDW_33710
Enzymes [BR:
aciq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
ACDW_33710
Messenger RNA biogenesis [BR:
aciq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ACDW_33710
Ribosome biogenesis [BR:
aciq03009
]
Prokaryotic type
rRNA processing factors
ACDW_33710
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
zf-C2HC_3
Motif
Other DBs
NCBI-ProteinID:
BEU97666
LinkDB
All DBs
Position
3808632..3811667
Genome browser
AA seq
1011 aa
AA seq
DB search
MKRMLINATQPEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDY
GEDRHGFLPFKEISRQYFAPGVSPSQARINEVIKEGQELLVQVEKEERGNKGAALTTFIS
LAGRYVVLMPNNPRGGGVSRRIEGEDRAELKEAMDQLEYPNGMSIIARTAGIGRTAPELQ
WDLNYLLKLWNAIDGAAKGGKGAFLIYQESSLVIRAIRDYFNNDIGDILIDTDDIYEQAQ
QFMAHVMPEHAARVKRYRDDAALFSRFQIEHQIESAYARTVQLPSGGAIVIDHTEALVSV
DVNSARAIKGGDIEETALRTNLEAADEVARQMRLRDLGGLIVIDFIDMEESRNRKEVENR
LRDALRQDRARVQFGTISKFGLMEMSRQRLKPALSEGSSIPCPRCGGAGHIRDTESSALQ
ILRIIQEESMKDNTAAVHCQVPVEVASFLLNEKRTEIAKIELKQRVSVLMVPNKALETPN
YRLERLKHDDPRLDHMDASYKLAEEVEDPTAVTRRSQEPTNKQTPVIKGVLPDAPAPVAE
PRPEGTARPARNGAGGTQGQRGASTAPAAPAPAPAAPQERGFFAWLKSLFGFGAPPAPAP
VAAPAPATPASENGSRGDGRRDGRGDGRNRRGGRDGSRDAQRDPNAAPTESRGRRNERSA
EGQNRAPRDGQRAEGEQQRNGEGRSTEGRNVESRDGRNGRNGRNRNDAEGRNGNNGNTAL
NADNALQAESAAPATSGHGDAGNGQPRNERGPRRERGEGGRRERGDRAPRSAEGQERFSA
APSLDFADTSPLASLPDLDLTGNEVTVQPAAPAGEERRERRSRDRYGRDRRERGDRGDRA
PRESADMGAEAPQAPAAQDVDNPPAAQEDTPRRSYFAPQAPAEAAAPAQAPVAAAQEPSA
PAAPVASASAVTAPAAAPVAPAAPAGMPRVQPYTLPMEELQQIAASSGLQWVNSDSEKVA
AAQAAIAAEPKPVHVPRERPPVVVLDEGPLVLVETRRDLAAMTLPFEQPSA
NT seq
3036 nt
NT seq
+upstream
nt +downstream
nt
atgaagcggatgctcatcaacgccacgcagcccgaagaacgccgcctggccatcgtcgac
ggacaaaagctcctcgactacgaaatcgagattgagggacgcgagcagcgcaagggcaac
atctacaaggccgtcgtcacacgcgtcgagccctcgctggaagcctgctttgtggactac
ggcgaagaccgccacggcttcctgccgttcaaggaaatctcccgccagtactttgccccc
ggcgtctcgcccagccaagcacgtatcaacgaagtcataaaggaaggccaggaactgctg
gtccaggtcgaaaaggaagagcgcggtaacaagggcgcagctctgaccaccttcatcagc
ctcgccggtcgctacgtggtgctgatgcccaacaacccccgtggcggtggcgtgtcgcgc
cgcatcgagggcgaggaccgcgccgaactcaaggaggcgatggaccagctggaatacccc
aacggcatgtccatcatcgcgcgcactgcagggattggccgcaccgcgcctgagctgcag
tgggacctgaactacctgctgaaattgtggaacgccattgacggcgctgccaagggcggc
aagggggcattcctgatttatcaggaatcgagcctggtgatccgcgccatccgcgactat
ttcaacaacgacatcggtgacatcctcatcgataccgacgacatctacgaacaagcgcag
cagttcatggcgcacgtcatgcccgagcatgccgcccgcgtgaagcgctaccgcgacgac
gccgccctgttcagccgcttccagatcgagcaccagatcgaatcggcctacgcccgcacc
gtgcaactgccctcgggcggtgccatcgtgatcgaccacaccgaagcactggtcagcgtg
gacgtgaactcagcccgcgccatcaagggtggcgacattgaagaaaccgcgctacgcacc
aatctggaagccgccgacgaagtggcacgccagatgcgcctgcgcgacctgggcggcctg
atcgtgatcgacttcatcgacatggaggagtcccgcaaccgcaaggaagtggaaaaccgc
ctgcgcgatgccctgcgccaggaccgtgcccgcgtgcagtttggcaccatcagcaagttc
ggcctgatggaaatgagccgccagcgcctcaaacccgcgctgtctgaaggctcctccatc
ccctgcccccgctgcggcggcgcaggccatatccgtgatacggaatcgtctgccctgcag
atcctgcggatcatccaggaagagtcgatgaaggacaacacggctgccgtgcactgccag
gtgccggtggaagtggcctcgttcctgctgaacgaaaagcgcaccgagatcgccaagatc
gaactcaagcagcgcgtgtcggtgctgatggtgcccaacaaggcactggagaccccgaac
taccgcttggaacgcctcaagcacgacgatcctcgcctggaccacatggacgccagttac
aagctggccgaagaggtggaagaccccacggcagtcacccgccgctcgcaagagcccacc
aacaagcagacgcccgtgatcaagggcgtgctccccgatgcacccgcaccggtggctgag
ccccgccccgagggaactgcacgccccgcccgcaatggcgcaggcggtacacagggccag
cgtggtgccagcacagcccctgcagcacccgcaccggcacctgcagctccgcaagagcgc
ggcttctttgcctggctcaagagcctgttcggctttggcgcacccccagcaccagctcct
gtggccgcgccagcacctgccacaccggcatccgaaaacggcagccgtggtgatggccgc
cgtgatggccggggagacggccgcaaccgccgtggcggacgcgacggttcacgggatgca
cagcgcgaccccaacgccgcgcctaccgaaagccgcggccgccgcaatgaacgctctgca
gaaggccagaaccgcgcaccacgcgacggccagcgggctgagggcgaacagcagcgcaac
ggagaaggccgcagcacggaaggtcgcaatgtagaaagccgcgacggacgcaatggccgc
aacgggcgtaatcgcaatgacgcagaaggccgcaatggcaacaacggcaacaccgcactg
aacgccgacaacgcgctgcaggcggaatctgccgccccagcgacctccggtcatggcgat
gcaggcaacggccagccacgcaacgaacgcggcccacgccgtgaacgtggcgaaggtggc
cgccgtgaacgcggtgaccgcgcgccacgcagtgccgagggccaggagcgattcagtgct
gcgcccagcctggactttgcagacacctcgcctctggcatcgttgcccgatcttgacctg
acaggcaacgaagtaacggtacaaccggctgcgccagcaggtgaagagcgccgcgagcgc
cgctcccgcgatcgttacggccgtgaccgccgcgaacggggtgatcgtggtgaccgcgca
ccgcgtgagagcgccgacatgggcgcggaggcaccacaggctcctgcagcacaggacgtg
gacaacccccctgcagcgcaggaagacaccccacgccgcagctactttgcgccccaggct
ccggcagaggctgcagcacctgcacaagcccctgtggcggctgcgcaagagccttccgca
ccagcagcaccagtggcatcagccagcgctgtgacagcccccgctgcggcacctgtggcc
cctgccgctccagcaggcatgccccgcgtgcagccctacacgctgcccatggaagagctg
caacagattgcagcgtcctccggactgcagtgggtcaactcggacagcgaaaaggtcgcg
gctgcgcaagctgccatcgccgccgaacccaagcccgtgcatgtgccacgcgagcgtcct
cccgtcgtggtgctggacgaaggcccgctggtgctggtggaaacccgtcgcgatctggcg
gcgatgactctgccgttcgagcaaccctcggcgtaa
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