Actinomadura citrea: OG979_05430
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Entry
OG979_05430 CDS
T09741
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
acir
Actinomadura citrea
Brite
KEGG Orthology (KO) [BR:
acir00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
OG979_05430 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
acir03021
]
OG979_05430 (rpoD)
Transcription machinery [BR:
acir03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
OG979_05430 (rpoD)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
HTH_PafC
Motif
Other DBs
NCBI-ProteinID:
WUR56443
LinkDB
All DBs
Position
complement(1156231..1157376)
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AA seq
381 aa
AA seq
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MLPSEAPSVDQVADLVARGRERGGVTVEDVAAALDRSDLPDDSLERVVRMLAEQGVEVLE
SQQETEDVPRADEGDLGKRAPTSDLVRIYLREIGRVPLLTAEDEVELAKSIEAGLFAEEK
MARTAVLARGELLDLELLSREGARAKQRLIEANLRLVVSIAKRYVGRGMLFLDLIQEGNL
GLIRAVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVQRQM
HQDLGREPSPEEIGLEMGLSPVRVVEIQRIAQEPVSLQSPIGEEDSDLGDFIEDADAVVP
MEAAAFILLQDQLEDILATLSEREQRIIQLRFGLADGHPRTLEEVGREFGVTRERIRQIE
SKTLAKLRHPSRAQMLREYLD
NT seq
1146 nt
NT seq
+upstream
nt +downstream
nt
gtgctgccaagcgaggcgccatcagtcgatcaggtggcggacctcgtcgcacgcggtaga
gagcgcggcggtgtgaccgtcgaggacgtcgctgccgcgctcgatcgctcggacttgccg
gacgactccctggagagggtcgtccggatgctcgcagagcagggggtggaggtcctcgag
tctcagcaggagaccgaggacgtcccgcgagcggatgagggagacctcggcaagcgggcg
ccgacgagcgacctggttcggatctacctgagagagatcggtcgcgtaccgctgctcacg
gcagaagatgaggtagaactcgcgaaatcgatcgaggcgggacttttcgccgaggagaag
atggcgcgcaccgccgtcctcgcccgcggcgagctgctcgacctcgaactgctctcccgc
gagggggcgcgggcgaagcaacggctgatcgaggccaatctccggctggtggtctcgatc
gccaaacgctacgtcggcaggggaatgctgttcctcgacctgatccaggagggaaatctc
ggactgatccgcgcggtcgagaaattcgactacaccaaggggttcaagttctcgacctac
gccacctggtggatccggcaggcgatcacccgggcgatcgccgaccaggcccggacgatc
cgcatcccggtgcacatggtggagacgatcaacaagctggtccgcgtgcagcgccagatg
caccaggacctcggccgggagccgagccccgaggagatcggcctggagatgggcctgtcg
cccgtccgggtcgtggagatccagcgcatcgcgcaggagccggtctcgctgcagtcaccg
atcggcgaggaggactccgacctcggcgacttcatcgaggacgccgacgccgtcgtgccg
atggaggccgcggcgttcatcctgctgcaggaccagctggaggacatcctcgccaccctg
tcggaacgggagcagcgcatcatccagctgcgcttcggcctggccgacggccacccgcgc
accctggaggaggtggggcgcgagttcggcgtgacgagggagcggatccgccagatcgag
tccaagacgctggcgaagctgcgccacccgtcccgggcccagatgctccgcgagtacctg
gactga
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