Actinomadura citrea: OG979_06065
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Entry
OG979_06065 CDS
T09741
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
acir
Actinomadura citrea
Pathway
acir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OG979_06065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acir03019
]
OG979_06065
Messenger RNA biogenesis [BR:
acir03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
OG979_06065
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Cuticle_1
Anti-Pycsar_Apyc1
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
WUR53523
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Position
complement(1300195..1301880)
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AA seq
561 aa
AA seq
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MSHPHPELSEPPAPPKGGLRIVALGGLGEIGRNMTVFEYGGRLLIVDCGVLFPETEQPGI
DLILPDFEYIRDRLDDIEAVILTHGHEDHIGAVPYLLRERRDIPLVGSRLSLALLEAKLT
EHRIKPVTNVVAEGERRAFGPFDCEFLAVNHSIPDALAVAVRTPAGLVLHTGDFKMDQLP
LDGRLTDLPGFARLGAEGIDLLMSDSTNAEVPGFVTSERNIGPVVDEVFRTAQGRLIVAC
FASHIHRVQQVLDAAVANGRKVCFVGRSMVRNMGVARELGYLNVPEDIMVEQKVIDDIPG
DRLVLVCTGSQGEPMSALSRMANRDHSIRITERDTVMLASSLIPGNENAVNRVINGLTRW
GARIVHKGNALVHVSGHASAGELLYVLNMTKPANFMPIHGEWRHLRAHAKLAALTGVPED
GIVIAEDGVVVDLLDGQAKIVGAVPAGYVYVDGLSVGEVTETSLKDRRILGEEGFVSIVI
GLDSTSGKLVAGPEVHARGAGIVNEDFNEVISRIEDVLRDAAGDGVNDVHQISQLIRRTV
GKWVSENYRRRPMIIPVVVEV
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
gtgagccatcctcacccggagctctcggaaccgcccgcgccgcccaagggggggctgcgg
atcgtcgcactcggcgggctgggggagatcggccgcaacatgacggtgttcgagtacggc
ggtcgcctgctcatcgtcgactgcggcgtgctcttccccgagaccgagcagcccggcatc
gatctgatactgcccgacttcgagtacatcagggaccggctggacgacatcgaggccgtc
atcctcacgcacggccacgaggaccacatcggcgccgtcccgtacctgctgcgcgagcgc
cgcgacatcccgctggtcggctcgcggctgtcgctggcgctgctggaggccaagctcacc
gagcaccgcatcaaaccggtgaccaacgtggtcgcggagggggagcgccgcgcgttcggg
ccgttcgactgcgagttcctcgccgtcaaccactcgatcccggacgcgctcgccgtcgcc
gtccgcacgcccgccgggctcgtcctgcacaccggcgacttcaagatggaccagctcccg
ctggacggccggctcaccgacctcccggggttcgcccggctcggcgccgagggcatcgac
ctgctgatgtcggactcgacgaacgccgaggtgccgggcttcgtcaccagcgagcgcaac
atcgggccggtcgtggacgaggtgttccgcactgcgcaggggcggctcatcgtcgcctgc
ttcgcctcgcacatccaccgcgtccagcaggtccttgacgccgccgtcgccaacggccgc
aaggtctgcttcgtcgggcggtccatggtccgcaacatgggcgtcgcgcgcgaactcggg
tacctgaacgtccccgaggacatcatggtcgagcagaaggtgatcgacgacatccccggc
gaccggctcgtgctggtgtgcaccggttcgcagggcgagccgatgtcggcgctgtcgcgg
atggccaaccgcgaccactcgatccgcatcaccgagcgcgacaccgtgatgctggcgtcc
tcgctgatcccgggcaacgagaacgcggtgaaccgcgtcatcaacggcctcacccggtgg
ggcgcccgcatcgtccacaagggcaacgcgctcgtgcacgtgtccgggcacgcctcggcg
ggcgagctgctgtacgtgctcaacatgaccaagccggcgaacttcatgcccatccacggc
gagtggcggcacctgcgcgcgcacgccaagctcgccgcgctcaccggcgtgccggaggac
ggcatcgtcatcgccgaggacggcgtcgtcgtcgacctcctggacggccaggccaagatc
gtcggtgcggtgcccgccgggtacgtgtacgtggacggcctgtcggtcggcgaggtcacc
gagacctccctgaaggaccggcgcatcctcggcgaggaggggttcgtctccatcgtcatc
ggcctcgactccacctccggcaagctcgtcgccggtcccgaggtgcacgcccgcggcgcc
ggcatcgtcaacgaggacttcaacgaggtcatctcgcggatcgaggacgtgctgcgggac
gccgccggcgacggcgtgaacgacgtgcaccagatcagccagctgatccggcgcaccgtc
ggcaagtgggtcagcgagaactaccgccgccgcccgatgatcatcccggtggtcgtcgag
gtctag
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