Actinomadura citrea: OG979_09175
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Entry
OG979_09175 CDS
T09741
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
acir
Actinomadura citrea
Pathway
acir03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
acir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
OG979_09175 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
acir03400
]
OG979_09175 (ligD)
Enzymes [BR:
acir01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
OG979_09175 (ligD)
DNA repair and recombination proteins [BR:
acir03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
OG979_09175 (ligD)
BRITE hierarchy
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
WUR54103
LinkDB
All DBs
Position
1963869..1964777
Genome browser
AA seq
302 aa
AA seq
DB search
MSSKRTAVEVDGRQLSLSNLDKGMYPEFTKGEVIDYYARIAPVMLPHLHDRAATRIRWPD
GVDGGKFFEKNAPSHTPDWVRTATIPTPGSSKGRDTLDFVVVDDLPTLVWCANLAALELH
IPQWKVGPRGKVHTPDLVVFDLDPGPPATIVEACEVAALLRDVLAEDGLESYPKTSGKKG
LHLYVPIEEPKEAERTSEYAKAAAQRLADENPKLVVAKMERRLRKDKVFVDWSQNNPAKT
TVAPYSLRAASRPSVSTPITWDELEACGDPADLVFGPEDVLARVDEHGDLLEPLLKDHRP
LP
NT seq
909 nt
NT seq
+upstream
nt +downstream
nt
gtgagcagtaagaggaccgccgtcgaggtggacggccgtcagctctccctctccaatctc
gacaagggcatgtacccggagttcaccaagggcgaggtcatcgactactacgcccgcatc
gccccggtcatgctcccccacctgcacgaccgcgccgcgacccgcatccgctggccggac
ggcgtcgacggcggcaagttcttcgagaagaacgccccctcccacaccccggactgggtc
cggacggcgacgatccccacccccggcagctccaagggccgcgacaccctcgacttcgtc
gtcgtcgacgacctgcccacgctcgtgtggtgcgcgaacctcgccgcgctggaactgcac
atcccgcagtggaaggtggggccgcgcggcaaggtgcacactcccgacctggtcgtcttc
gacctggacccgggcccgcccgccacgatcgtggaggcgtgcgaggtcgccgccctgctg
cgcgacgtgctcgccgaggacggcctggagtcctacccgaagacgagcggcaagaagggc
ctgcacctctacgtcccgatcgaggagccgaaggaggccgagcggacgtccgagtacgcc
aaggccgccgcgcagcgcctggccgacgagaacccgaagctggtcgtcgcgaagatggag
cggcggctgcgcaaggacaaggtgttcgtcgactggagccagaacaacccggccaagacg
accgtcgcgccctactcgctgcgcgccgcgagccgcccgtcggtgtcgacgccgatcacc
tgggacgagctggaggcgtgcggggaccccgccgatctcgtcttcggccccgaggacgtc
ctcgcccgggtggacgagcacggtgacctcctggaaccgcttctgaaggaccaccggccg
ctgccctga
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integrated database retrieval system
