Actinomadura citrea: OG979_09470
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Entry
OG979_09470 CDS
T09741
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
acir
Actinomadura citrea
Brite
KEGG Orthology (KO) [BR:
acir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
acir03016
]
OG979_09470
Enzymes [BR:
acir01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
OG979_09470
Transfer RNA biogenesis [BR:
acir03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
OG979_09470
Prokaryotic type
tRNA splicing ligases
OG979_09470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
WUR56478
LinkDB
All DBs
Position
complement(2019324..2020682)
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AA seq
452 aa
AA seq
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MRVPGVLFASRELLAPAENAIEQVAHVAALPGVVEASYAMPDVHLGYGFPIGGVAATDPR
EGGVVSPGGVGFDISCGVRLLAADTDASGLAPGLRDLMDGLDPVIPRGMGKGAVWHLPGR
RDLTGILTGGARYAVEQGHGNERDLRRCEDAGAVADADPGQVSERAVERGARQVGSLGSG
NHFLEVQRVAEVYDADAAGAFGLRPGQVCVMIHCGSRGLGHQICTDHVRAMEAAMPRYGI
EVPDRQLACAPVDSAEGRAYLGAMAAAANYGRANRQLLTEAARRVFRRVAGARLDLVYDV
SHNLAKLEEHVVDGEPRRLCVHRKGATRALPPGHPDLPPDLREAGQPVLIPGTMGTSSYV
LTGVPGAPAFSSTCHGAGRVQSRHQAARGVGGRQLRAALEERGIAVRPSSWRGLAEEAPD
AYKDVSAVVEAAEGAGLCRKVARLVPLGVVKG
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgtgcccggcgtgctgttcgcgtcgcgagagctgctggcgcccgccgagaacgcg
atcgagcaggtcgcccacgtcgccgcgctcccgggagtggtggaggcctcgtacgccatg
cccgacgtccacctgggatacggcttcccgatcggcggcgtggcggcgaccgatccgcgc
gagggcggcgtggtctcgcccggcggcgtcggattcgacatctcgtgcggcgtccggctg
ctggcggcggacaccgacgcctccggcctcgcccccggcctgcgggacctgatggacggc
ctcgaccccgtcatcccgcgcggcatgggcaagggcgcggtgtggcatctgccgggacgg
cgggacctgaccggcatcctcacggggggagcgcggtacgcggtcgagcagggccacggg
aacgagcgcgacctgcgccgctgcgaggacgcgggagcggtcgccgacgccgaccccggc
caggtgagcgagcgcgcggtggagcgcggcgcccggcaggtcggcagcctcggctcgggc
aaccacttcctggaggtgcagcgggtcgccgaggtctacgacgcggacgcggccggggcg
ttcgggctgcggccgggccaggtctgcgtcatgatccactgcgggtcgcgcgggctcggc
caccagatctgcaccgaccacgtccgggcgatggaggcggcgatgccgcggtacggcatc
gaggtccccgaccggcagctcgcctgcgccccggtcgactccgccgagggccgcgcctac
ctgggcgcgatggcggcggcggccaactacggccgcgccaaccgccagctgctcaccgag
gcggcgcgccgggtgttccgccgggtcgcgggcgcccggctcgacctcgtctacgacgtc
tcgcacaacctggccaagctcgaagagcacgtggtggacggcgagccgcggcggctgtgc
gtgcaccgcaagggggccacccgcgccctgccgcccggccatcccgatctgccgcccgac
ctgcgcgaggccgggcagcccgtgctgatccccgggacgatggggacctcgtcctacgtc
ctgacgggcgtgccgggcgcgccggcgttctcgtccacgtgccacggcgccggacgggtg
cagagccgccaccaggccgcacgcggcgtcggcggcaggcagctgcgggcggcgctggag
gagcggggcatcgccgtgcggccgtcgtcgtggcgcggcctggccgaggaggcgccggac
gcctacaaggacgtgtccgccgtggtcgaggccgccgagggcgcgggactctgccggaag
gtcgcccgcctcgtcccgctgggcgtcgtgaagggctga
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