Actinomadura citrea: OG979_10975
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Entry
OG979_10975 CDS
T09741
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
acir
Actinomadura citrea
Pathway
acir03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
acir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OG979_10975 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
acir03400
]
OG979_10975 (mfd)
Enzymes [BR:
acir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OG979_10975 (mfd)
DNA repair and recombination proteins [BR:
acir03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
OG979_10975 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
CarD_TRCF_RID
UvrB_inter
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
MFD_D3
DUF4404
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
WUR54441
LinkDB
All DBs
Position
complement(2387096..2390674)
Genome browser
AA seq
1192 aa
AA seq
DB search
MTLSGLVDLACTDPGLRNALTRPRTDREIVAPAALWPILAAALSRRLGEDGAGVVLAVTA
TGREAEDLTAALSSLLDPGRVAHFPAWETLPHEKLSPRSDTVGQRLAVLRRLVHPGAGGP
PGGDGSAKGGALDVVVTPVRAVLQPIVSGLADLEPVRLASGEDADMDDAVRRLVEAGYHR
VDLVEKRGEIAVRGGILDVFPPTEEHPLRVEFWGDTVEEIRYFKAADQRSLEVAQGGLWA
PPCRELPLTEKVRERAKLLAQEHPALEEILGRIADGDTVEGMEAFSPVLAESMELLTDLL
PDGSALLVCEPERIRTRSVELVRTSQEFLEASWVNAAAGGEAPIDLGAAAFRSLEEVREH
STELGLPRWSVTALSPLAAGGAVGELPDAESPDGGAEALSLGVQQAEAYRGDTSRVVGDL
KGWTDGGWRVVLVTAGHGPAERLVQLAREEGVGARLADLAGAPDPSVVTVTTGLLENGFT
WESVKLAVLTETDLSGQKSSTRDARRMPSRRRGGIDPLQLKTGDYVVHEQHGVGRYVEMV
SRTVQGATREYLILEYAKSDRLFVPTDQLEELTRYVGGEAPSLHRLGGADWQKAKSRARK
AVKQIAGELIRLYSARMASPGHGFAPDTPWQRELEDAFPYNETPDQLAAIDEVKGDMERP
VPMDRLICGDVGYGKTEIAVRAAFKAVQDGRQVAVLVPTTLLVQQHLSTFAERFAAFPVV
VKPISRFQSDKEIEETLRGVSEGSVDVVVGTHRILSSQTRFMNLGLVVIDEEQRFGVEHK
EELKRLRTQVDVLAMSATPIPRTLEMGLTGIREMSTILTPPEERHPVLTFVGPYEEKQIA
AAIRRELLREGQVFFVHNRVRSINKVAANLARLVPEARIAVAHGQMNEHELEKVMVDFWE
KNYDVLVATTIVESGLDVPNANTLIVDRADMYGLSQLHQLRGRVGRGRERAYSYFLYQPE
QPLTETAHERLATLAQHTEIGAGMYVAMKDLEIRGAGNILGAEQSGHVAGVGFDLYVRMV
GEAVRELKEGGAAPEAVETRVELPVDAHLPHEYVPGERLRLDAYRRIAAITSEDEIGAVH
EELKDRFGPLPVPVLNLLEVARFRAKARRAGLSDVTLQGTFVKFMPVDLPDSKQVRLQRL
YPKSILKPATDTLLVPAPKTAQLGGRPLRDQELLKWATDLVDALFLESAARR
NT seq
3579 nt
NT seq
+upstream
nt +downstream
nt
atgacgctttctggacttgttgaccttgcatgcaccgaccccggtctgcggaacgcgctc
acgcggccgcgcacggaccgggagatcgtcgcgcccgccgcgctgtggccgatcctggcc
gccgcgctgagccgccgcctgggcgaggacggcgcgggcgtcgtgctcgcggtgaccgcg
acgggccgcgaggccgaggacctgaccgccgccctgtcgagcctgctcgaccccgggcgc
gtcgcgcacttcccggcctgggagacgctgccgcacgagaagctgtcgccgcgctcggac
acggtcgggcagcggctcgcggtgctgcgccgcctcgtccacccgggcgcgggcggcccc
cccggcggggacggctcggcgaagggcggcgcgctggacgtcgtggtgacgccggtccgc
gcggtgctgcagccgatcgtgtccggcctcgccgacctggagccggtgcggctggcctcc
ggcgaggacgccgacatggacgacgcggtccggcgcctggtggaggccgggtaccaccgc
gtcgacctggtggagaagcgcggcgagatcgcggtgcgcggcgggatcctcgacgtgttc
ccgccgaccgaggagcacccgctccgggtggagttctggggcgacaccgtcgaggagatc
cgctacttcaaggccgccgaccagcgctcgctggaggtcgcgcagggcgggctgtgggcg
ccgccgtgccgcgagctgccgctgacggagaaggtgcgcgagcgcgcgaagctgctcgcg
caggagcacccggccctggaggagatcctcggccggatcgccgacggcgacaccgtggag
ggcatggaggcgttctcgcccgtcctcgccgagagcatggagttgctgaccgacctgctg
ccggacgggtcggcgctgctggtctgcgagccggagcggatccgcacccggtcggtcgag
ctggtccgcacgagccaggagttcctggaggcgagctgggtcaacgccgccgccggggga
gaggcgccgatcgacctcggcgccgcggcgttccgctcgcttgaggaggtccgcgagcac
agcacggagctggggctgccgcggtggagcgtgacggcgctgagcccgctggcggcgggc
ggcgcggtcggcgagctcccggacgccgagtccccggacggcggcgcggaggcgctgagc
ctcggggtgcaacaggcggaggcctaccgcggcgacacctcccgcgtcgtcggcgacctc
aagggctggacggacggcggctggcgcgtcgtgctggtcaccgccgggcacgggcccgcc
gagcggctcgtccagctcgcccgggaggagggcgtcggcgctcggctcgccgatctggcc
ggggcgcccgatccgtcggtcgtcacggtcacgaccgggctgctggagaacgggttcacc
tgggagtcggtcaagctcgcggtgctgaccgagaccgacctgtcggggcagaagtcgtcc
acgcgggacgcgcggcgcatgccgtcgcggcggcgcggcggcatcgacccgctccagctc
aagacgggcgactacgtggtgcacgagcagcacggcgtcgggcggtacgtggagatggtc
agccggacggtgcagggcgccacccgcgagtacctgatcctggagtacgccaagagcgac
cggctgttcgtcccgaccgaccagctggaggagctcacccgctacgtcggcggcgaggcg
cccagcctccaccggctcggcggcgccgactggcagaaggccaagtcccgcgcccgcaag
gcggtcaagcagatcgccggggagctgatccggctctactcggcgcggatggcgagcccc
ggccacgggttcgcgcccgacaccccgtggcagcgggagctggaggacgccttcccctac
aacgagacgcccgaccagctcgccgccatcgacgaggtgaagggcgacatggagcggccc
gtcccgatggaccggctgatctgcggcgacgtcggctacggcaagaccgagatcgccgtg
cgggcggcgttcaaggccgtccaggacgggcggcaggtcgcggtgctcgtgccgacgacg
ctgctggtgcagcagcacctgtcgacgttcgccgagcggttcgcggcgttccccgtcgtg
gtgaagccgatcagccggttccagtccgacaaggagatcgaggagacgctgcggggggtg
tcggagggctcggtggacgtcgtggtcggcacgcaccggatcctgtcgtcgcagacccgc
ttcatgaacctcggcctggtggtcatcgacgaggagcagcggttcggcgtcgagcacaag
gaggagctgaagcggctgcggacgcaggtggacgtgctcgccatgtcggcgacgccgatc
ccgcggacgctggagatgggcctcaccggcatccgcgagatgtcgacgatcctcaccccg
ccggaggagcgccaccccgtcctgacgttcgtcggcccgtacgaggagaagcagatcgcc
gcggcgatccggcgcgagctgctgcgcgagggccaggtgttcttcgtgcacaaccgcgtc
cgctccatcaacaaggtggcggcgaacctggcgcggctcgtcccggaggcgcggatcgcg
gtcgcgcacggccagatgaacgagcacgagctcgagaaggtcatggtcgacttctgggag
aagaactacgacgtcctcgtcgcgaccacgatcgtggagtccgggctggacgtcccgaac
gccaacaccctcatcgtcgaccgcgccgacatgtacgggctgtcgcagcttcaccagctg
cgcgggcgggtggggcgcggccgggagcgggcctactcctacttcctctaccagccggag
cagccgctcaccgagaccgcgcacgagcggctcgcgaccctggcccagcacaccgagatc
ggggccggcatgtacgtcgcgatgaaggacctggagatccgcggcgcgggcaacatcctc
ggcgccgagcagtccgggcacgtcgcgggcgtcggtttcgacctgtacgtccggatggtc
ggcgaggcggtgcgggagctgaaggagggcggcgcagcgcccgaggccgtcgagaccagg
gtcgagctgcccgtcgacgcgcacctgccgcacgagtacgtgccgggcgagcggctccgg
ctggacgcctaccggcggatcgccgcgatcacctccgaggacgagatcggcgccgtgcac
gaggagctgaaggaccggttcggtccgctgcccgtcccggtgctgaacctgctggaggtc
gcccggttccgggccaaggcccgcagggcggggctgagcgacgtcaccctccagggcacc
ttcgtcaagttcatgcccgttgaccttcccgactccaagcaggtcaggctgcagcgcctg
tacccgaagagcatcctgaagccggcgaccgacaccctgctcgtgcccgccccgaagacc
gcgcagctcggcggccgcccgctgcgcgaccaggagctgctgaagtgggcgaccgacctg
gtggacgcgctgttcctggagtccgcggcgcggcgctag
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