Actinomadura citrea: OG979_29035
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Entry
OG979_29035 CDS
T09741
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
acir
Actinomadura citrea
Pathway
acir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OG979_29035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acir03019
]
OG979_29035
03009 Ribosome biogenesis [BR:
acir03009
]
OG979_29035
Enzymes [BR:
acir01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
OG979_29035
Messenger RNA biogenesis [BR:
acir03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
OG979_29035
Ribosome biogenesis [BR:
acir03009
]
Prokaryotic type
rRNA processing factors
OG979_29035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
Motif
Other DBs
NCBI-ProteinID:
WUR49921
LinkDB
All DBs
Position
6246452..6249562
Genome browser
AA seq
1036 aa
AA seq
DB search
MLENEADAAAAEGADDGTVDDETAQTESAQSGSAQSGNAQSEGTGVTSRPRRASRPAGPP
PDVDDTSAGAPAAQPEPASAERPAPAEEPAAPAEAAEPPKRTRTRARKSTKAAAETAEPV
PMTGAETSPEAPAEQPEPASAEQPAEEAPAPRTRTRRRSTKAAAEVPSVPQVPAVPVAGE
VPTPEQVSETEPASGVGVPGVTFQPPMVVFQPPQPKAEAPARPKPAEAEPAVQDAGEDQD
QDQDQDHGPADEDDSDDRPSRRRRRRGGRGRGRGGKEGAEDEGDDTEADDEAEAEEPKEE
QPAKPARAARAAKGKTAKGGKASKAKDREQDKEPKAEEPEQGAAEGEDDDAEGGTSRRRR
RRRRRTGADGEAGGGTDDPPNTVVHVRTAREERAAAEDEVQSVRGSTRLEAKKQRRREGR
EQGRRRPPVITEAEFLARREAVERVMVVRQEGERTQIAVLEDDVLVEHYVNRATHQSYVG
NVYLGKVQNVLPSMEAAFVDIGKGRNAVLYAGEVNWDASGLEGQPRRIESALRSGQSVLV
QVTKDPLGHKGARLTSQVSLPGRYLVYVPDGSMTGISRKLPDKERSRLKSILKKVMPEHA
GVIVRTAAEGATEEELARDVSRLAAQWDSIQKKVKTASAPSLLYGEPDLTIRVVRDIFNE
DFTKLVVSGAEAWDTVSDYVQYVAPHLADRVERWNGDQDALSAYRIDEQLAKALDRKVWL
PSGGSLVIDRTEAMTVIDVNTGKFTGQGGNLEETVTRNNLEAAEEIVRQLRLRDIGGIIV
VDFIDMVLESNRDLVLRRLVECLSRDRTKHQVAEVTSLGLVQMTRKRVGQGLLEAFSETC
ESCNGRGIHVHLTPVEPKAEKAAGKESGRRRKRKGEVEKAVEEKLSRHEPKPKEAAEEPA
REPASETAPVVEAAPEPARSRPKKSRPAKRPAGPPPEIDEAPAQAAVEAAEAAEETADTA
PGALDSPEPVQVGSNGAEPAGGEPAGELNGTGAAAGESNGSAPAGDQDGAEPARRRRARR
PRATAAQAADGGESSD
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atgcttgagaacgaagccgatgcggccgcggccgaaggcgccgacgacgggaccgttgac
gacgagaccgcccagaccgagagtgcgcagagcgggagtgcgcagagcgggaacgctcag
agcgagggcacgggcgtgacgtcgcgtccgcgccgtgcgagccggcccgccggcccgccg
cccgacgtggacgacacctccgccggggcccccgccgctcagccggagcccgcctccgcc
gagcggcccgcgcccgccgaggagcccgcggcgcccgccgaggcggccgagccgccgaag
cggacccggacccgcgcgcgcaagagcacgaaggccgccgccgagacggccgagcccgtc
ccgatgaccggcgccgagacctcccccgaggcccccgccgagcagcctgagcccgcctcc
gccgagcagcccgccgaagaggcgccggcgccccgcaccaggacccgccgccgctccacc
aaggccgcggccgaggtcccgtccgtgccgcaggtccccgccgtcccggtcgccggggag
gtgccgacccccgagcaggtgtcggagaccgagcccgcgagcggcgtcggcgtccccggc
gtgacgttccagccgccgatggtcgtcttccagccgccgcagcccaaggccgaggcgccc
gcccggccgaagcccgccgaggccgagcccgccgtgcaggacgccggcgaggaccaggac
caggaccaggaccaggaccacgggccggcggacgaggacgactccgacgaccgcccgtcc
cgccgtcgccgccgccgcggcggccgcggacggggccggggcggcaaggagggcgccgag
gacgagggcgacgacaccgaggccgacgacgaggccgaggccgaggagcccaaggaagag
cagcccgccaagcccgccagggccgccagggccgccaagggcaagacggccaagggcggc
aaggcgtccaaggccaaggacagggagcaggacaaggagcccaaggccgaggagcccgag
cagggagccgccgagggcgaggacgacgacgcagagggcgggacgagccgccgccgtcgc
cgtcgtaggcgccggaccggggccgacggcgaggccggcggcggcaccgacgacccgccg
aacaccgtcgtccacgtccgcacggcccgcgaggagcgcgccgccgccgaggacgaggtc
cagtccgtgcggggctcgacccgcctggaggccaagaagcagcgccgccgcgagggccgc
gagcagggccgccgccgcccgccggtgatcaccgaggcggagttcctggcccgccgcgag
gccgtcgagcgggtcatggtggtccgccaggagggcgagcgcacccagatcgccgtcctg
gaggacgacgtgctcgtcgagcactacgtcaaccgcgcgacgcaccagtcgtacgtcggc
aacgtctacctcggcaaggtccagaacgtcctgccgtcgatggaggcggcgttcgtcgac
atcggcaagggccgcaacgccgtgctgtacgcgggcgaggtcaactgggacgcctccggg
ctggagggccagccccgccgcatcgagtcggcgctgaggtcgggccagtcggtgctcgtg
caggtcaccaaggaccccctcggccacaagggcgcccggctgaccagccaggtctccctg
cccggccggtacctggtctacgtgccggacggctcgatgaccggcatcagccgcaagctg
cccgacaaggagcgcagccgcctcaagtcgatcctgaagaaggtcatgccggagcacgcc
ggcgtgatcgtgcggaccgcggccgagggggcgaccgaggaggagctcgcccgcgacgtc
tcgcgcctggccgcccagtgggacagcatccagaagaaggtcaagacggcctcggcgccg
tccctgctctacggcgagcccgacctgacgatccgggtcgtccgcgacatcttcaacgag
gacttcaccaagctcgtcgtgtccggcgccgaggcctgggacaccgtctccgactatgtc
cagtacgtcgccccgcatctggccgaccgcgtcgagcgctggaacggcgaccaggacgcc
ctgtcggcgtaccgcatcgacgagcagctcgccaaggcgctggaccgcaaggtctggctg
ccgtccggcggctcactggtgatcgaccgcaccgaggcgatgacggtcatcgacgtcaac
accggcaagttcaccgggcagggcggcaacctggaggagaccgtcacccgcaacaacctg
gaggcggccgaggagatcgtccgccagctccggctccgcgacatcggcggcatcatcgtg
gtcgacttcatcgacatggtgctggagagcaaccgcgacctggtgctgcgccgcctcgtg
gagtgcctgtcgcgggaccgtaccaagcaccaggtcgccgaggtcacctcgctcgggctg
gtgcagatgacccgcaagcgggtcggccaggggctgctggaggcgttctcggagacctgc
gagtcctgcaacggccgcggcatccacgtccacctgacgccggtcgagccgaaggcggag
aaggcggccggcaaggagtccggacgccgccgcaagcgcaagggcgaggtcgagaaggcc
gtcgaggagaagctgtcccggcacgagcccaagcccaaggaggccgcggaggagcccgcg
agggagcccgcctccgagacggcgccggtcgtggaggccgcgccggagccggcccgttcg
cggccgaagaagtcccggcccgccaagcgcccggcgggcccgccgcccgagatcgacgag
gccccggcccaggccgccgtggaggccgccgaggccgccgaggagaccgccgacaccgcg
ccgggcgcgctcgactcccccgagccggtgcaggtcggctcgaacggcgccgaaccggcg
ggcggcgagcccgccggtgagctgaacggcacgggggcggccgccggcgagtccaacggc
tccgcgcccgcgggcgaccaggacggcgccgagcccgcccgccggcgccgtgcccgccgc
ccccgcgcgacggcggcgcaggccgccgacggcggcgagtcctcggactga
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