Actinomadura citrea: OG979_29755
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Entry
OG979_29755 CDS
T09741
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
acir
Actinomadura citrea
Pathway
acir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OG979_29755
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acir03019
]
OG979_29755
03400 DNA repair and recombination proteins [BR:
acir03400
]
OG979_29755
Enzymes [BR:
acir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OG979_29755
Messenger RNA biogenesis [BR:
acir03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OG979_29755
DNA repair and recombination proteins [BR:
acir03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
OG979_29755
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
AAA_30
Pribosyltran
Sox_N
Motif
Other DBs
NCBI-ProteinID:
WUR50054
LinkDB
All DBs
Position
6400903..6402996
Genome browser
AA seq
697 aa
AA seq
DB search
MSSSDGLRDEAERCLRALAGDHARLRDDQWTAISALVVERRRALVVQRTGWGKSAVYFVA
TRLLRERGAGPTVIVSPLLALMRNQIDAAVRAGIRARTINSSNTGDWDQVFAEVEQGAVD
VLLVSPERLNNPDFRDLVLPKLAAGAGLVVVDEAHCISDWGHDFRPDYRRLRTLLAELPP
GIPVLATTATANARVTEDVAEQLAGDDALVLRGPLERDSLHLAVVNLPSAEQRIAWLGEH
LGDLPGSGIIYTLTVAAAHEITGWLRDRGHEVAAYSGQTEQAERLQAERDLHDNKLKALV
ATSALGMGFDKPDLGFIVHVGAPQSPVAYYQQIGRAGRGVDRAEVILLPGREDRDIWAYF
ASLAFPPEHIVRSTLDVLDTADRPLSTTALEPLVDLNRARLEMMLKVLDVDGAARRVKGG
WTSTGEPWSYDRERYERVTAERRREQQAMLDYIATSGCREEFLRRQLDDPAAAPCGRCDN
CTGRHWPTDVTQESATQARERLQRPGVDIAPRRMWPTGVKDDLGVSGRIKPELQAETGRA
LGRLTDIGWGNRLRDLFAAGDTEVPADLVDAVVQVLAAWDWTDRPTGVVTIGSRSRPRLV
TTFGRRIAQIGRLPYLGELVPVGEPVPRRHNSAQRLRSVWHTLTVPTDLAEALADDPGHI
LLVDDRIETGWTMTVATRLLKEAGARTTLPLALATPN
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atgagctcttcggacggtctgcgcgacgaggccgagcggtgcctgcgcgccctcgccggt
gaccacgcgcgcctgcgcgacgaccagtggacggcgatcagcgcgctcgtcgtcgagcga
cggcgcgccctcgtcgtgcagcggacgggctggggcaagtccgccgtctacttcgtggcg
acccggctgctgcgcgagcgcggcgccggccccacggtgatcgtctcgccgctgctggcg
ctgatgcgcaaccagatcgacgccgccgtccgggcgggcatccgcgcccgcacgatcaac
tcctccaacaccggcgactgggaccaggtcttcgccgaggtcgagcagggcgcggtcgac
gtcctgctggtgagccccgagcggctcaacaaccccgacttccgcgatctcgtcctgccc
aagctcgccgcgggcgccgggctggtcgtggtcgacgaggcgcactgcatctccgactgg
ggccacgacttccgccccgactaccggcggctgcgcaccctgctggccgagctgccgccc
ggcatcccggtgctcgccaccaccgcgacggccaacgcccgcgtcaccgaggacgtcgcc
gagcagctcgccggcgacgacgccctggtcctgcgcgggcctctcgaacgcgactcgctg
cacctcgccgtggtgaacctcccctccgccgagcagcgcatcgcctggctgggcgagcat
ctcggcgacctcccgggcagcggcatcatctacaccctcaccgtcgcggcggcccacgag
atcaccgggtggctccgcgaccgcggtcacgaggtggccgcctactccggccagaccgag
caggccgaacgcctccaggccgagcgggacctccacgacaacaagctcaaggccctcgtc
gccaccagcgccctcggcatgggcttcgacaagcccgacctcggcttcatcgtccacgtc
ggcgccccgcagtccccggtggcctactaccagcagatcggccgcgcgggccgcggcgtc
gaccgcgccgaggtgatcctgctgcccggccgcgaggaccgcgacatctgggcctacttc
gcgagcctcgccttcccgccggagcacatcgtccgcagcacgctggacgtcctggacacg
gccgaccgccccctctccaccacggccctggaaccgctggtcgacctcaaccgggcccgc
ctggagatgatgctcaaggtcctcgacgtcgacggcgccgcccgccgcgtcaagggcggc
tggacgtccaccggcgagccctggtcctacgaccgcgagcgctacgagcgcgtcaccgcc
gaacgccgccgcgaacagcaggccatgctcgactacatcgcgacttccggctgccgcgag
gagttcctgcgccgccagctggacgaccccgccgcggccccctgcggccgctgcgacaac
tgcacgggccgccactggcccaccgacgtcacccaggagagcgcgacccaagcccgcgaa
cgcctgcagcgtcccggcgtcgacatcgccccccgccgcatgtggccgaccggcgtcaag
gacgacctgggcgtctccggccgcatcaagcccgagctgcaggccgagacgggccgcgcc
ctcggccgcctcaccgacatcggctggggcaaccgcctgcgcgacctgttcgccgccggc
gacaccgaggtccccgccgaccttgtggacgccgtcgtgcaggtcctcgccgcctgggac
tggacggaccgccccaccggcgtcgtcaccatcggctcccgctcccgcccccgcctggtc
acgacgttcgggcggcgcatcgcccagatcggccgcctgccgtacctgggggagctggtc
cccgtcggcgagcccgtgccgcgccgccacaacagcgcccagcgcctccgctcggtctgg
cacaccctgaccgttcccaccgacctggcggaggccctcgccgacgaccccggccacatc
ctcctggtggacgaccgcatagaaaccggctggacgatgaccgtggccacccgcctcctg
aaggaggccggagccagaaccaccctcccgctggccctggccacccccaactga
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