Actinomadura citrea: OG979_41180
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Entry
OG979_41180 CDS
T09741
Name
(GenBank) hypothetical protein
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
acir
Actinomadura citrea
Pathway
acir03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
acir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
OG979_41180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
acir03400
]
OG979_41180
Enzymes [BR:
acir01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
OG979_41180
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
OG979_41180
DNA repair and recombination proteins [BR:
acir03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
OG979_41180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Zn_ribbon_TFIIB
Auto_anti-p27
Zn_ribbon_IS1595
DZR
Zn_ribbon_6
DUF7351
DZR_2
Zn_ribbon_8
DNA_ligase_ZBD
Zn_ribbon_3
Zn_Ribbon_1
Motif
Other DBs
NCBI-ProteinID:
WUR52197
LinkDB
All DBs
Position
8949875..8950657
Genome browser
AA seq
260 aa
AA seq
DB search
MPELPDVEGFRRVLAEHTGEPIASVSVLDPGVLRGVTARRLSTALRGRRFEEPHRHGKWL
LAPAQGPVVLLHFGMTGSLTWHRPDEPRHRHDRVVWELPDGELRYRDMRKLQGVHLTATA
READETLATLGPDALDLSRDDLAAALTHHRGRLKTTLTDQAVIAGLGNLLTDEICWRARI
NPLRPARDLTAPDVTTLHRAMRRVLHDSIKAARVPPRRTWLTGARDTPAPTCPRCGTPLE
SRRLSGRRTVWCPQCQPDGT
NT seq
783 nt
NT seq
+upstream
nt +downstream
nt
atgccggaacttcctgacgtcgaaggcttccgccgggtgctcgccgagcacaccggcgag
ccgatcgcctcggtgtcggtgctcgaccccggcgtcctgcgcggcgtcaccgcccggcgc
ctgagcacggcgctgcgcggccgccgcttcgaggagccgcaccgccacggcaagtggctg
ctcgccccggcgcagggcccggtcgtcctgctccacttcggcatgacgggttcactcacc
tggcaccgcccggacgagccgcgccaccgtcacgaccgcgtcgtctgggaactccccgac
ggcgaactccggtaccgcgacatgcgcaaactccaaggcgtccacctgaccgccaccgcc
cgggaggccgacgagaccctcgcgactctcggcccggacgccctggacctctcccgcgac
gacctggccgccgccctcacccaccaccggggccgcctcaaaacgaccctcacggaccag
gcggtcatcgccggcctgggcaacctcctgaccgacgaaatctgctggcgagcccgcatc
aaccccctacgccccgcccgcgacctgaccgctccggacgtcaccaccctccaccgggcc
atgcgccgcgtcctccacgactccatcaaggccgcacgcgtcccgccccgcagaacctgg
ctcaccggagcccgagacaccccggcccctacctgcccccgctgcggcacccctctggaa
agccgccgcctctccggccgccgaacggtctggtgcccccaatgccaaccggatgggaca
tag
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integrated database retrieval system
