Arthrobacter citreus: HPK19_05975
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Entry
HPK19_05975 CDS
T06606
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
acit
Arthrobacter citreus
Pathway
acit03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acit00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HPK19_05975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acit03019
]
HPK19_05975
03009 Ribosome biogenesis [BR:
acit03009
]
HPK19_05975
Enzymes [BR:
acit01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HPK19_05975
Messenger RNA biogenesis [BR:
acit03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HPK19_05975
Ribosome biogenesis [BR:
acit03009
]
Prokaryotic type
rRNA helicases
HPK19_05975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
UvrD-helicase
Terminase_6N
Flavi_DEAD
SNF2-rel_dom
SecA_DEAD
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QKE72376
LinkDB
All DBs
Position
complement(1148619..1150064)
Genome browser
AA seq
481 aa
AA seq
DB search
MNKTSFDDYHVSEEIKRALAVLKYKTPTEVQSKVIPLALEKQDLIVKSQTGSGKTAAFSI
PVCEMLEWEEKRPQALILTPTRELAAQVREDITNIGRFKRIKAVAVYGKEPFTKQKVELE
QKTHVVVGTPGRVLDHLDRETLVTDQIKYLIIDEADEMLNRGFIDEVEAIISQLPQNRVT
MVFSATLPKDVENLCHTYMKDPIQIEIESTGVTADAIEHFLIEVKEDEKMSLLKDVTVVE
NPESCLIFCRTKENVDAVYSQLEQANYSCERLHGGLEQEDRFAIMEGFKMGNFRYLIATN
VAARGIDIDNVTLVINYDVPMEKESYVHRTGRTGRAGNKGKAITFSTPFEGKFVKGIEKY
IGFEIPTIEAPTQQEVLNGKAKFEEKLNSRRVVRNNKTARINQDILKLHFSGGKKKKIRA
VDFVGTIAKIPGVTVEDIGIITIMDNMSYVDILNGKGSLVLQAMENATVKGKKLKVSKAI
K
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgaataaaacaagttttgatgattatcatgtaagcgaggaaattaaaagagcactagct
gttttaaaatacaaaacgccaactgaagttcagagtaaggttattccgttagcattagaa
aaacaagaccttattgtaaaatctcaaacaggtagcggaaaaacagctgcttttagtatt
cctgtttgtgaaatgttagagtgggaggaaaaaagacctcaggccttaattcttactcca
actagggagcttgcggctcaagtacgtgaagatattacgaatattgggagatttaaacga
attaaagcagtagcggtttatggcaaagagccttttactaaacaaaaagttgaattggaa
caaaaaactcatgtagtagttggtacacctggacgggtcctggatcatcttgatcgagaa
acacttgtaacagatcaaataaagtatctaatcattgatgaagcagatgagatgcttaat
agaggttttatcgatgaagtcgaagcaatcattagccaactaccacaaaatcgtgtaacg
atggttttttctgctacactaccaaaagatgttgaaaatctctgccatacatatatgaaa
gacccgattcaaattgagattgaatcaactggcgtaacggcagatgcaattgagcatttt
ttaatcgaagtaaaagaagatgaaaaaatgtcactacttaaagatgttacagttgtagaa
aatccagaaagttgtctaattttttgcagaactaaagaaaatgtagatgctgtatacagc
caattggaacaagctaactattcatgtgaaagactgcatggaggactggaacaagaagac
cgttttgctattatggaaggtttcaaaatggggaatttccgttatcttatagcaactaat
gtagctgctagaggtattgatattgataatgtgacattagtgatcaactatgacgttcct
atggaaaaagagagttatgtacaccgaactgggagaactggtcgtgcagggaataaaggt
aaagcaatcactttttcaacaccttttgaagggaaattcgttaaaggaattgaaaagtat
atcggctttgaaatacctactatagaagcaccgactcaacaggaagtacttaatggaaaa
gctaaatttgaagaaaagcttaatagccgacgagttgtaagaaataataaaacagcccgt
atcaatcaagatattttaaaactgcacttcagtggaggaaaaaagaagaaaattcgtgct
gttgattttgttggaacaatcgcaaaaatccctggagtcacagttgaagatattggcatt
attacaatcatggataatatgtcgtatgttgatattctgaatggtaagggttctcttgtt
ttacaagcgatggagaatgcgactgtcaaagggaaaaaattaaaagtaagtaaagcaatc
aaatag
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