Arthrobacter citreus: HPK19_22245
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Entry
HPK19_22245 CDS
T06606
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
acit
Arthrobacter citreus
Pathway
acit03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acit00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HPK19_22245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acit03019
]
HPK19_22245
Messenger RNA biogenesis [BR:
acit03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HPK19_22245
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
QKE75253
LinkDB
All DBs
Position
complement(4675000..4676673)
Genome browser
AA seq
557 aa
AA seq
DB search
MSPTKSMLSVFALGGINEIGKNMYAIQYLKEIILIDCGSKFPDESLLGVDLIIPDITYLK
ENQEKIKGLFVTHGHEDHIGGIPYLLKQLNIPVYASRLTLGLIELKLKEHGLLGETELIL
IDSDSIIKFEHFSTSFFKTNHSIPDCLGIVFETPEGTVVHTGDFKFDLTPVNNQYPDIHK
MAEIGSKGVLLLLSESTNAERPGSTPSERIVGEHIIDAFMKAKQRVIISTFASNVHRVQQ
IVDASVITNRKLALLGRSMINVVQVAMEQGYLTVPEGLLIDTDEINNFAPEAITILCTGS
QGEPLAALARLASSSFRGVDVYPGDTVILAASPIPGNERSVSRIIDNFYNLGANVIYGSG
SSTGMHVSGHAYQEELKLMLTLMKPKYFIPIHGEYRMLHHHRALAESVGVERKNIFIIKN
GDVVDILQSEAIQSRRIPAGNIYVDGMGIGDVGNIVLRDRKQLAEDGMLVIVITINKAER
KIISGPDTISRGFVYARDSESLLKEVNKIAISSVKELLDENKLQWGVMKQNIKKSLGQFL
FTKTKRKPMILPIIIEI
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
ttgagtccaacaaaaagtatgctatcagtctttgccctgggcggtatcaatgaaattgga
aagaatatgtatgccattcaatatttaaaagaaatcattctaatagactgtggttcgaaa
tttccggacgagagtttattgggtgttgacttgatcattccagatataacttacctaaaa
gaaaaccaagagaaaattaaaggcttatttgttacgcacggtcacgaggatcatatcgga
ggaatcccataccttttaaagcaactaaatattccagtttatgcttctagattaacacta
ggattaatcgaactaaaattgaaggaacatggactccttggtgaaacagaactaatttta
atagattctgattcaattattaaatttgaacacttttcaacttcattttttaaaacgaat
catagtatacccgattgcttagggattgtatttgaaacgcctgaaggtacagttgtacac
accggggattttaagtttgatttaactcctgtaaataatcaatatccagatattcataaa
atggctgaaatcggtagtaaaggtgttttattactattatcagagagcacaaacgctgaa
aggccaggctcaacaccatctgaacggattgttggtgaacatataattgatgcttttatg
aaagcaaaacagcgtgtgattatttcaacattcgcttcgaatgtacatagagttcagcaa
attgttgatgcatcggttatcacaaatcgaaagttagctttactcggaagaagtatgatt
aacgtagttcaagttgctatggagcaaggctacttaaccgttccagagggtcttttgatt
gatactgatgaaattaataattttgcacctgaagccattacaattttatgtacaggtagc
caaggagaacctcttgccgctcttgctcgattagctagctctagctttagaggtgttgat
gtttatcctggtgatactgtgattttagctgcttctccaataccaggtaatgagcgaagc
gtttcgcgaattatcgataatttttacaatctcggagcaaatgttatatatggctcagga
agttcaacaggtatgcatgtatccggacatgcataccaagaagagcttaaactcatgtta
acattaatgaaaccaaaatactttattccaattcatggcgaatatagaatgcttcatcat
catcgtgcacttgccgaatctgttggagtagaacgcaaaaatatctttatcattaaaaac
ggcgatgttgtcgatattttacaatcagaggcaattcaaagtcgaagaataccagcagga
aatatttacgtagacggaatgggaattggtgatgttggtaacatcgtattaagagatcga
aaacaacttgctgaagatggcatgcttgtaatcgtcattacgattaataaggctgaacga
aaaataatctctggccctgatacaatttcaagaggatttgtttatgctcgtgattctgaa
agcttactaaaggaagtaaataaaatcgccatatcttctgtaaaagaattacttgatgaa
aacaaactccaatggggcgttatgaagcaaaatattaaaaaatcccttgggcaattttta
tttactaaaacaaagagaaaaccaatgattttgccgattattattgaaatataa
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