Acinetobacter sp. NCu2D-2: A3K93_10350
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Entry
A3K93_10350 CDS
T08302
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
aciu
Acinetobacter sp. NCu2D-2
Pathway
aciu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aciu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A3K93_10350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aciu03019
]
A3K93_10350
03016 Transfer RNA biogenesis [BR:
aciu03016
]
A3K93_10350
Enzymes [BR:
aciu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
A3K93_10350
Messenger RNA biogenesis [BR:
aciu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
A3K93_10350
Transfer RNA biogenesis [BR:
aciu03016
]
Prokaryotic type
tRNA degradation factors
A3K93_10350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
OB_RNB
RNase_II_C_S1
CusB_dom_1
Motif
Other DBs
NCBI-ProteinID:
ANF82548
UniProt:
A0A172YR04
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All DBs
Position
2162990..2165431
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AA seq
813 aa
AA seq
DB search
MMKNWVDPEAKAEAERYDNPIPSRTLILEVVEKNESQSHAELVEYFEIADQKSIDALSHR
LIAMVRDGQLMKDGYKFQIAAKQPEHEATVYINSKGMGTANISGQDDLLLPERELRQVFN
GDRVKVRQTSVDRKGKAWGFITEVVQHRVKQIIGKVAVHEGEYFIQPGNPNAHQPITLEK
ELIEHAKVNVGDSVRIAIDDYPTKEELATGHIVQSMADKADTEIIIPQTILEFGLPYEFP
EDVVKEAESFKEPSAKDREGRIDLRDLALVTIDGEDARDFDDAVYAEKRPGGGYRVVVAI
ADVSHYVRPGKPLDDEAQERGTSVYFPHFVLPMLPEALSNGLCSLNPNVDRLCMVCDLKL
SRAGRVTGYEFYPSVMHSKARLTYDQVAQYFEGDSQAITEDRDVRKSLNTLFQLYQVLKG
LRAERHAMEFETVETYMTFDELGGINEILPRTRNDAHKLIEECMLLANVAAAEYSLKNEI
PMLYRVHEPPEFSRIQKVRDFVKLLGLNFPEQPTQADYQAVIEATKDRIDAPSIHAVLLR
SMMQAYYGANNAGHFGLAYDAYTHFTSPIRRYPDLLLHRAIKAQLAKKPYPISGAALDDA
GEHFSATERRADEASRSVTTWLKCHYMKQHLGEEFVGTISATAEFGLFVTLKDLYVDGMI
HVSQLGDDFFVFDQASQNLVGQNRGQIFGLGDEVKIKVAGVNLEERKIDFELIQQLSHAG
RPIRERAPRVANKAKAPRVEPQEDVFIKDRPRLASSEDNGDQPRRKKGKGKPSSYSKKPA
KKSAGKSETKAKDKVKKKAKAKKKKSNAKAKGE
NT seq
2442 nt
NT seq
+upstream
nt +downstream
nt
atgatgaaaaattgggtcgatcctgaagcaaaagctgaagccgaacgttatgacaaccct
attcctagccgaactttgattctcgaagtcgtagaaaaaaatgaatcccagtcacatgct
gaactggtggaatattttgaaattgctgaccaaaaaagtattgatgctttaagtcaccgc
ctgattgcaatggtacgtgatggtcagttaatgaaagatggttataagttccaaattgcg
gcaaagcaacctgaacatgaagcgacggtctatatcaattccaaaggtatgggcacagca
aatatttcaggtcaggacgatttacttttacctgaacgtgaattacgccaagtctttaat
ggcgatcgcgtcaaagtacgtcagacttctgtcgatcgtaaaggtaaagcatggggcttt
attacagaagtcgtgcagcaccgcgttaaacaaattattggtaaagtggcagtgcatgag
ggcgaatactttattcagcccggcaatccgaatgcccatcagccaattaccttagaaaaa
gaattgattgaacacgccaaagtaaatgtaggcgattcagttcgtattgcgattgatgac
tatccaacaaaagaagaattggcgactggtcacatcgtacaatcgatggcagacaaagcc
gatactgaaattattattccgcaaaccattttagaatttggtctgccttacgaattccct
gaagacgtagtcaaagaagccgaaagctttaaagaaccaagtgcaaaagatcgtgaaggt
cgtatcgacttacgtgacttagctttagtcactattgatggtgaagatgcacgtgacttt
gacgatgcagtctatgccgaaaaacgtccaggtggcggttaccgtgtcgtagttgcgatt
gccgatgtcagtcactatgtgcgtccaggtaaacccttagatgatgaagcacaagaacgt
ggtacatcggtgtattttccacatttcgtcttaccaatgttgcctgaagcattatcaaac
ggactttgttcactcaatccaaacgttgaccgcttatgtatggtctgcgacctgaaactg
tctcgtgcaggtcgtgtgacaggttatgagttctacccttctgtaatgcattcaaaagcg
cgtcttacttatgatcaagttgcgcaatattttgaaggcgatagccaagccattactgaa
gatcgtgatgtacgtaaatccctgaatacgctattccagttgtatcaagtgcttaaaggt
cttcgtgctgaacgccacgcaatggaattcgaaactgttgaaacatacatgacattcgat
gaactcggtggaatcaacgaaatcttaccgcgcacccgcaatgatgcacataagctgatt
gaagaatgtatgttgcttgctaacgttgctgctgcagaatattcattaaaaaatgaaatt
ccaatgctataccgtgtgcatgagccacctgaattctctcgcattcaaaaagttcgcgat
ttcgttaaacttttaggtttgaatttccctgagcaaccaactcaagctgattatcaagcg
gtgattgaagcaaccaaagatcgtattgatgcgccaagtattcatgcggttttattgcgt
tctatgatgcaggcctactatggtgcaaacaacgcaggtcacttcggtttggcttatgat
gcctatacgcatttcacatcaccaattcgtcgctaccctgacttgctattacaccgtgcg
atcaaagcacagttagctaaaaaaccatatccaatttcaggtgctgcacttgatgatgcc
ggtgaacatttctctgcaacagagcgccgtgcagatgaagcctctcgttctgtaaccact
tggctgaaatgtcattatatgaaacagcatttgggcgaggaatttgttgggactatcagt
gctactgctgaatttggtttgttcgtcaccttaaaagacctttatgttgatggcatgatc
catgtcagccaactcggtgatgacttctttgtgtttgatcaagcaagtcaaaacttagtc
ggtcaaaaccgtggtcaaatctttggtttaggcgatgaagttaaaatcaaagtggcaggt
gtaaaccttgaagaacgtaaaattgactttgaactgattcaacaattgtctcatgcgggt
cgtccaattcgcgaacgtgcaccacgtgtggcgaataaagcgaaagcacctcgtgtagag
ccgcaagaagatgtctttattaaagaccgtccccggcttgcaagtagcgaagacaacgga
gaccagcccagacgaaagaaaggcaaaggaaagccaagctcctacagcaaaaagcctgct
aagaaatctgcaggaaagtctgaaacaaaggctaaagataaagtaaagaaaaaagccaaa
gcgaaaaagaaaaaatccaatgccaaagcaaagggtgaatga
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