Acidovorax sp. JMULE5: EXV95_01890
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Entry
EXV95_01890 CDS
T10357
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
aciv Acidovorax sp. JMULE5
Pathway
aciv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aciv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EXV95_01890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aciv03019
]
EXV95_01890
Enzymes [BR:
aciv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EXV95_01890
Messenger RNA biogenesis [BR:
aciv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EXV95_01890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Fe-ADH
UvrD-helicase
AAA_22
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
QLA79524
LinkDB
All DBs
Position
complement(389134..390960)
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AA seq
608 aa
AA seq
DB search
MTFDELNLAPAILKAVHETGYETPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPML
HRLSQSAAPKNKFGGKGIRALVLTPTRELAAQVEESVREYGKYLDINSTVVFGGVGMNPQ
IDRVKRGVDILVATPGRLLDLQQQGFLDLSTVQVLVLDEADRMLDMGFIHDVKKVLALVP
KDKQSLLFSATFSDEIRDLANTLLKNPQSIQVTPSNTTVQRISQVIHPVGRGKKKQVLLH
IIQQHNWSQVLVFTRTKFGANNVAEFLTKNGVQAMALHGNKSQSARTQALAGFKSGEIRA
LVATDIAARGIDIDDLPHVVNYEIPNVSEDYVHRIGRTGRAGATGEAVSLVCMDEEGFMM
DIERFTKQQIPVQIIEGFGPDAGEKAEPIAMGRQTIWGGAGKPPSRDVMQAAAKAARSEM
MDRIRTNKAGQGAGGGGGGDRGPRTGGGGGARGGRAGGAPAAAGGGGNGPRGGRAGGGGG
AQGGGARAGGQAPARGRSGGSAGGGGGGYEGGNRYDDSQPPRANAHLGTHMGHANPGHRN
SSHAGGAGGQPDPMRTSVDSMGGGGRRGGGGYRGNNGGGGGYGGGTGGSGGRGNGSRGPG
GSRGSFGR
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atgacatttgacgaactgaacctggctcctgccatcctgaaggccgtgcacgaaacgggc
tacgaaacccccacgcccattcaggcccaggccattcccgccgtgctcgcaggccacgac
ctgctggctggcgcgcagactggcaccggcaagaccgccgcgtttaccctgcccatgctg
catcgcctttcgcaaagcgctgcccccaagaacaagttcggtggcaagggcatccgtgcc
ctggtgctgacgcccacccgcgaactcgccgcccaggtggaagaatccgtgcgcgaatac
ggcaaatacctggacatcaactccaccgtcgtcttcggcggtgtgggcatgaacccgcag
atcgaccgcgtcaagcgcggggtggacattctggtggccacgcccggccgcctgctggac
ttgcagcagcagggtttcctggacctgtcgaccgtgcaggtactggtgctcgacgaggcc
gaccgcatgctggacatgggtttcatccacgacgtgaagaaggtgctggccctggtgccc
aaggacaagcaaagcctgctgttctcggccaccttcagcgatgaaatccgcgacctggcc
aacaccctgctcaagaaccctcagagcatccaggtcacccccagcaacaccaccgtgcag
cgcatctcgcaggtgattcaccccgtgggccgtggcaagaagaagcaggtgctgctgcac
atcatccagcagcacaactggagccaggtgctggtgttcacccgcaccaagtttggcgcc
aacaatgtggccgagttcctgaccaagaacggcgtgcaggccatggccctgcatggcaac
aagagccagagtgcgcgcacccaggcactggcaggcttcaaaagcggcgaaatccgcgcc
ctggtggccaccgacattgcagcgcgcggcattgacatcgacgacctgccgcacgtcgtc
aactacgaaatcccgaacgtctctgaagactacgtgcaccggattggccgcacgggccgc
gctggtgctactggcgaagccgtgagcctggtctgcatggacgaagaaggcttcatgatg
gacatcgagcgcttcaccaagcagcagatcccggtccagatcatcgaaggcttcggcccc
gacgcgggcgagaaggcagagcccatcgccatgggtcgccagaccatctggggcggtgca
ggcaagcccccgagccgtgacgtgatgcaggcagccgccaaggcagcccgtagcgaaatg
atggaccgcatccgcaccaacaaggccggccagggtgctggcggcggcggtggcggtgac
cgtggcccccgcactggcggcggcggtggtgcccgtggcggccgcgccggtggtgcacct
gctgcagcgggcggtggcggcaatggtccgcgcggtggccgtgccggtggtggcggtggc
gcccagggcggcggcgcacgcgctggcggccaggcacctgcacgcggccgctccggcggc
agcgccggtggcggaggcggcggctacgaaggcggcaatcgctacgacgactcgcaaccc
ccacgcgcgaatgcccacctgggcacgcacatgggccacgccaacccgggccatcgcaac
tccagccatgcaggcggcgctggcggccagccagatcccatgcgcaccagcgtggacagc
atgggcggcggcggtcgccgtggcggcggtggctatcgtggcaacaacggtggaggtggc
ggctatggcggaggcacgggtggttctggtggccggggcaacgggtctcgtgggccgggc
ggttctcgcggctcttttggccgctga
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