Acidovorax sp. JMULE5: EXV95_03265
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Entry
EXV95_03265 CDS
T10357
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
aciv Acidovorax sp. JMULE5
Brite
Enzymes [BR:
aciv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
EXV95_03265 (hrpA)
Messenger RNA biogenesis [BR:
aciv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
EXV95_03265 (hrpA)
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GFIT
Other DBs
NCBI-ProteinID:
QLA79751
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Position
698589..702665
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AA seq
1358 aa
AA seq
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MTESAPPHPLPTAPRTAPLRITFPESLPVSGKREEIMEAIKKHQVIIVCGETGSGKTTQL
PKIALALGRGKCNARPGTKGQLIGHTQPRRIAASSVAKRIAEELNTPLGDVVGFKVRFQD
RLSRDASVKLMTDGILLAETQTDPLLKNYDTIIIDEAHERSLNIDFLLGYIRQILPRRPD
LKVIVTSATIDADRFAKHFESAKGPAPVIMVSGRTFPVEQRYRPFEESRDYGLNEAIADG
VDELWQGNAAGDILVFLPGEREIREAADHLRKHLSHQPVMRNAEVLPLFARLSQAEQDRI
FDGHTGRRIVLATNVAETSLTVPGVRYVIDAGTARVKRYSFRSKVEQLLVEPVSQAAANQ
RAGRCGRVANGICIRLYDEAGFNGRPRFTDPEILRSSLAGVILRMKSLHLGDVTQFPFIE
APSGRAIADGYQLLAELGAVDDANELTPMGVELSRLPLDPRVGRMIIEARDRKALDEVLV
IASALSVQDVRDRPMEAQQQADQAHAKFDDDKSEFSGYLKLWKWINEARGGAPSLPSARA
QKAMAAQKAPSQAYLPVAQRSGGGSPAAAPAVPAAVPAATHKLSNRQYEQLLRQNFISIR
RLREWRDIHTQLLTVVTEHKWQINTQPASYEQLHLSMLAGLLGNVGAKSDEEDWYLGARG
IKFYKHPGAHLNKKPGRWIVASELVETTRLFGRGIAAIEPQWLEQIGGHVLRKQLLDPHW
EKKSAEVVALERATLYGIVVYNNRRVNFGKVDPHAAREVFIREALVGGNWETKLPFLAAN
QKLIAKVEELEHKSRRQDVLVDDELIYAFYDHQLPPEVCSGHSFEAWYREESKKQPDLLK
LTRDELMRHEAAGITTNAFPKTVRLGGVDCAASYLHEPGDARDGITVTIPLFVLNQVSDE
RCEWLVPGMLKDKIQALLKSLPQRPRSRFVPLSESATRLAALLGTPERFGTGSLTDVLLK
QVRDETSLDVKRADFKLDMLSPHLFMNFRVVDEHGRQLGHGRNLGALKAEWGAKARGAFQ
ALAGLKLSGGAAESEKNESKVPPALDGKAQAATKSGVKGAAPATAKPASVTPSPPAGQRY
TTWTFGELPELMEIKKAGQTLIGFPALIDGGDAVTIEVFDEPEVAAAKHRAGLRCLFALQ
IKDALKYLEKNIPDLQKMAVAYMPLGTQEELRTQIIDVALDRAFLLDPLPTDEVAFKRRV
EEGRGRLTLIANEVARLAATILTEYAAAARKIKDTKNAPEATADALQQLQRLVPKNFIAV
APWTQLAHYARYLKAITLRLDKYRADPARDAAKLAELRPQEQRYWRLVAERKGQVDARMQ
ELRWLLEELRVSFFAQELRTPQPVSVKRLDKLWAQVNS
NT seq
4077 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaatccgcgcctccccaccccttgccaaccgccccgcgcactgcgccgctgcgc
atcacctttcctgagtccctgcccgtatcgggcaagcgcgaagagatcatggaggccatc
aagaagcaccaggtcatcatcgtgtgcggcgaaacgggctccggcaaaaccacgcagttg
cccaagattgcactggcgctgggccggggcaagtgcaacgccaggccaggcaccaagggc
cagctcatcggccacacccagccgcgccgcattgcggccagcagcgtggccaagcgcatt
gccgaagagctgaacacgccgctgggcgatgtggtgggcttcaaggtgcggttccaggac
cgcctctcccgcgatgcctccgtcaagctcatgaccgacggcatcttgctggccgagacg
cagaccgacccgctgctcaagaactacgacaccatcatcattgacgaggcgcacgaacgc
agcctcaacatcgacttcctgctgggctacatccgccagatcctgccgcgcaggcctgat
ctgaaggtcatcgttacctcggccacgattgatgcggaccggtttgccaagcactttgag
tcggccaagggcccggcccccgtcatcatggtgtcgggccgcaccttcccggtggagcag
cgctatcgcccgtttgaagaaagccgcgactacggcctgaacgaagccattgccgatggt
gtggacgagctgtggcaaggcaatgcggccggtgacatcctggtgtttttgcccggcgag
cgagagatccgcgaagcggccgaccaccttcggaagcatctgtcgcaccagcccgtgatg
cgcaatgccgaggtgctgccgctgttcgcgcgtttgtcccaggcggagcaggaccgcatc
tttgacggccacacgggccgccgcatcgtgctggccaccaacgtggccgagacttcgctt
accgtaccaggcgtgcggtacgtcattgacgcaggaacagcgcgcgtgaagcgctattct
ttccgtagcaaagtcgagcagctgctggtcgagcccgtcagccaggccgccgccaaccag
cgtgctggccgctgcggccgagtggccaacggcatctgcattcgcctgtatgacgaggcc
ggtttcaatggccgcccccgttttaccgaccccgaaatcctgcggtcatcgctggcaggc
gtcatcctgcgcatgaagtcgctgcacctgggcgacgtgacgcagttccccttcatcgag
gcgccttcgggccgcgcgattgccgacggctaccagctgctggccgaattgggcgcggtg
gatgacgccaacgagctgacccccatgggagtggagctttcgcgcctgccgctggacccg
cgcgtgggccgcatgatcatcgaggcgcgcgaccgcaaggcgctcgatgaagtgctggtg
attgccagcgccctgagcgtgcaggacgtgcgcgaccgtcccatggaggcgcagcagcag
gccgaccaggcgcacgccaagttcgacgacgacaagagcgagttcagcggctacctcaag
ctgtggaaatggatcaacgaagcgcggggcggagcacccagcctgccatcggcccgtgcc
cagaaggcgatggccgcgcagaaagcgccttcgcaggcctacttgccggtggcgcagcgc
agtggcgggggcagtcctgccgcagcgcctgctgtacccgccgccgtccccgctgcgact
cacaaactcagcaaccgccagtacgagcagctgctgcgccagaacttcatcagcatccgc
cgcctgcgcgagtggcgcgacatccacacccagctgctcacggtggtcaccgagcacaag
tggcagatcaacacccagcccgccagctacgagcagctgcacctgtcgatgctggccggg
ctgctgggcaacgtaggcgccaagagcgacgaggaagactggtacctgggcgcgcgcggc
atcaagttctacaaacaccccggcgctcacctgaacaagaagccggggcgctggatcgtg
gcgtcggaactggtggaaaccacgcggttgttcggccggggcattgcggctattgagccg
caatggctcgaacagattggcgggcatgtgctgcgaaagcagctgctcgacccacattgg
gagaagaagtctgccgaggtggtggcgctggagcgcgccacgctctacggcatcgtggtc
tacaacaaccgccgcgtgaacttcggcaaggtagacccgcacgctgcgcgcgaggtgttc
atccgcgaggcgctggtgggtggcaactgggagaccaagctgcctttcctggccgccaac
cagaagctcattgccaaggtcgaagagctggagcacaagtcgcgccgccaggacgtgctg
gtggacgacgaactcatctacgccttctacgaccatcagctgccgcccgaggtatgcagc
ggccacagctttgaggcttggtaccgcgaagaaagtaaaaaacagcctgatctgctcaag
ctcacccgcgatgagctgatgcgccacgaggccgcaggcatcaccaccaacgcctttccc
aaaaccgtgcgactgggtggcgtggactgcgccgccagctacctgcacgagcccggcgat
gcgcgcgacggcatcaccgtgaccatcccgctcttcgtgctcaaccaggtgagcgacgag
cgctgcgaatggctggtgccgggcatgctcaaggacaagatccaggcgctgctcaaaagc
ctgccgcagcgcccacgcagccgctttgtgccgctgtccgagtccgccacccgtctggcc
gcgctgctgggcacgcccgaacgttttggcaccggcagcctcactgatgtgttgctcaag
caggtgcgcgacgaaacctcgctggatgtgaagcgggcggacttcaagctcgacatgctc
agcccgcacttgttcatgaacttccgcgtggtggacgagcacggccgacagcttggtcat
ggccgcaacctgggcgcgctcaaggccgaatggggcgccaaggcgcgcggcgcattccag
gcgctggcagggctcaagctcagtggcggggcggcagagagtgaaaaaaatgagtcaaaa
gtgcctccagcgcttgatggtaaagcgcaagcagctactaaatcaggagtaaagggtgca
gcgcccgccaccgcgaaacctgcgagcgtcaccccatcgccccccgcaggccagcgctac
accacctggacgtttggcgagttgcccgagctgatggagatcaaaaaggccgggcagacg
ctgatcggctttccggcgctcatcgacggcggcgacgctgtgaccatcgaggtttttgac
gagcccgaagtcgccgcagccaaacaccgcgcgggcctgcgctgcctgtttgcgctgcag
atcaaggacgccctcaagtacctggaaaaaaacatccccgacctgcagaagatggccgtg
gcctacatgcccctgggtacacaagaagagctgcgcacccagatcatcgacgtggcgctg
gaccgggcctttttgctcgacccgctgcccaccgacgaagttgccttcaagcgccgcgtg
gaagagggcaggggccgcctcacgctgatcgccaacgaggtcgcgcgcctggccgccacc
atcctcactgaatacgcagccgccgcccgcaagatcaaggacaccaaaaacgcccccgaa
gccacagcggacgcactgcagcagctgcagcgcctggtgcccaagaacttcattgccgtg
gccccgtggacgcaactggcccactacgcccgctacctcaaagccatcacgctgcggctt
gataaataccgcgccgaccccgcccgtgacgctgccaaactggccgagctgcgcccgcaa
gagcagcgctactggcgcctggtggccgagcgcaaggggcaggttgatgcgcgcatgcag
gagctgcgctggctgctggaggagctgcgcgtgagcttctttgcgcaggagctgcgcacg
ccgcagccagtgagtgtgaagcggctggataagttgtgggcgcaggtcaacagctga
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