Acidovorax sp. JMULE5: EXV95_07165
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Entry
EXV95_07165 CDS
T10357
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
aciv Acidovorax sp. JMULE5
Brite
KEGG Orthology (KO) [BR:
aciv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
aciv03009
]
EXV95_07165 (rlmD)
Enzymes [BR:
aciv01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
EXV95_07165 (rlmD)
Ribosome biogenesis [BR:
aciv03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
EXV95_07165 (rlmD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
RrnaAD
Methyltransf_31
TRM5-TYW2_MTfase
Methyltransf_25
Methyltransf_11
TPMT
Methyltransf_23
MTS
Motif
Other DBs
NCBI-ProteinID:
QLA80436
LinkDB
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Position
complement(1573511..1574974)
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AA seq
487 aa
AA seq
DB search
MSEPKELSPSFEPTAQDSQSDLPEGWLQVQSMDLDAQGVARKPDGKVIFIDGALPFELVT
ANTHRKKNNWEQASLVAIHRESSQRVRPGCPHFGLHAGACGGCKMQHLHVGAQVAVKQRV
LEDNLWHLGKVKAQTMLRPIEGPSWGYRYRARLSVRHVIKKGQVLIGFHERKSRYVADMQ
QCPVLPPHVDAMLMPLRALIAGMDARDTCPQIELACGDTVTALVLRHLEPLSADDLARLR
AFAAEHHVQWWLQPKGPDTVKLLDEGGELLSYALPDFGITMPFKPTDFTQVNPHINRVLV
SRALRLLDVQPHERVIDWFCGLGNFTLPLATQAREVLGIEGSEALVARSRENYALNQAVA
PDHKALAATDFVARNLFEMTPEMLVADGSADKWLVDPPREGAFALAKALADIEQARIGAE
GAGPLPTGAEGWAPPKRIVYVSCNPATLARDAGLLVHLAGYRCTAAGMVNMFPHTAHVES
MAVFERD
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaaccgaaagaactatccccctcgtttgaacccaccgcgcaggattcccagagc
gacttgcccgaaggctggctgcaagtgcagtccatggacctggatgcccagggcgttgcc
cgcaaacccgacggcaaggtgatcttcatcgacggtgccctgccgttcgagctggtcacc
gccaacacccaccgcaaaaagaacaactgggagcaggccagcctggtggcgattcaccgc
gaatcgtcgcagcgtgtgcgccccggctgtccgcactttggcctgcacgccggtgcctgc
ggtggctgcaagatgcagcacctgcacgtgggcgcccaggttgccgtcaagcagcgcgtg
ctcgaagacaacctctggcacctgggcaaggtcaaggcccagaccatgctgcggcccatc
gaaggcccgtcctggggttatcgctaccgcgcccgtttgtcggtgcgccatgtgatcaag
aagggccaggtgctgatcggctttcacgaacgcaagagccgctatgtggccgacatgcag
cagtgccccgtgctgcccccccatgtggacgccatgctgatgcccttgcgcgcgctgatt
gccggcatggatgcgcgcgacacctgcccccagatcgaactggcctgcggcgacaccgta
accgcgttggtgctgcggcacctggagccgctgagtgcggatgacctcgcccggttgcgc
gcctttgcggccgaacaccacgtgcaatggtggctgcagcccaaggggcccgacacggtg
aagctgctggacgaagggggcgagctgctgtcatatgcgctgccggactttggcatcacc
atgccgttcaagcccaccgacttcacccaggtgaacccgcacatcaaccgcgtgctggtg
tcgcgtgcgctgcgcctgctggatgtgcagccgcacgaacgcgtgatcgactggttttgc
ggtttgggcaatttcacgctcccactggccacacaggcgcgcgaggtgctgggcatcgaa
ggcagcgaggccctggtggcccgttcgcgcgaaaactatgcattgaatcaggccgtggcg
cctgaccataaagcgctagcagctactgattttgtagcgcgcaacctgttcgaaatgacc
ccggaaatgctggtggccgacggatctgccgacaaatggctggtggacccaccccgcgaa
ggggcgtttgccctggccaaggcccttgccgacatcgagcaggcgcgcatcggcgccgaa
ggcgcgggcccgctgccaacgggggcggagggctgggccccgccgaagcgcatcgtctac
gtgagctgcaaccccgccacactggcgcgcgacgccgggctgctcgtgcacctggcaggc
taccggtgcacggcggcgggcatggtgaacatgttcccgcacacggcacacgttgagagc
atggcggtgttcgagcgcgactga
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