Acidovorax sp. JMULE5: EXV95_09695
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Entry
EXV95_09695 CDS
T10357
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
aciv Acidovorax sp. JMULE5
Pathway
aciv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aciv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EXV95_09695
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aciv03019
]
EXV95_09695
03009 Ribosome biogenesis [BR:
aciv03009
]
EXV95_09695
Enzymes [BR:
aciv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
EXV95_09695
Messenger RNA biogenesis [BR:
aciv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EXV95_09695
Ribosome biogenesis [BR:
aciv03009
]
Prokaryotic type
rRNA processing factors
EXV95_09695
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
zf-C2HC_3
Motif
Other DBs
NCBI-ProteinID:
QLA80881
LinkDB
All DBs
Position
2135665..2138796
Genome browser
AA seq
1043 aa
AA seq
DB search
MKRMLINATQPEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDY
GEDRHGFLPFKEISRSYFTPGVSPSQARINEVIKEGQELLVQVEKEERGNKGAALTTFVS
LAGRYVVLMPNNPRGGGVSRRIEGEDRAELKEAMDQLEYPNGMSIIARTAGIGRTAPELQ
WDLNYLLKLWNAIDGAAKGGKGAFLIYQESSLVIRAIRDYFNNDIGDILIDTDDIYEQAQ
QFMAHVMPEHAARVKRYRDDAALFSRFQIEHQIESAYARTVQLPSGGAIVIDHTEALVSV
DVNSARAIKGGDIEETATRTNLEAADEVARQMRLRDLGGLIVIDFIDMEESKNRREVENR
LRDALRQDRARVQFGTISKFGLMEMSRQRLKPALSEGSSIPCPRCGGSGHIRDTESSALQ
ILRIIQEESMKDNTAAVHCQVPVEVASFLLNEKRTEIAKIELKQRVAVLMVPNKTLETPN
YRLERLKHDDPRLDHIEASYKLAEEVEDPTAVTRRSQEPTNKQTPVIKGVLPDAPAPVAE
PRAEGAARPPRAGQRPAAATAPAPAPVATPAPAAAAPQEQGFFGWIKSLFGVGTTPAAPA
PVAAPAPAAAPETPARGEPRRDGRNGEGRGRRGGRDGNRDGQREGAPRDGNREGNGEGRG
RRGERSAEGRAPRDAERRPEGEAREGQGRDGGRNGREGREGGGRGRRDNTEPRNQNAGLN
GDNNTAVTAQVEGPNAGNPGNSTEGQPTQQPRGERGPRRERGDRGNRGERGERTPRAVEA
QETAAAAVPGDFADTAPLAALPDLDLSGNDAQPNGNGAAAEEQRRERRSRDRYGRDRRER
GERGPRDNNGNAEAAAPAMLDFDPTQAEPAPAQDEAPRRSYFSAPAAEPSAAAPAPAPVA
APVPAPAHAPTPVAAPVAAPVAAPVAAAPAPVAAPAPVAASAPAAAPVAPVVPAANGLPR
VQAFALPIDELQQVAAASGLQWVNSDMDKIAAVQAAIAAEPKPIRVPRERPPAVVLDEGP
LVLVETRRDLSAMKLPFEQTPSA
NT seq
3132 nt
NT seq
+upstream
nt +downstream
nt
atgaagcggatgctcatcaacgccacgcagcccgaagaacggcgcctggccatcgtcgac
ggacaaaaactcctcgactacgaaatcgaaatcgaagggcgcgagcagcgcaagggcaac
atctacaaggccgtcgtcacgcgcgtcgagccctcgctggaagcctgttttgtggactac
ggcgaagaccgccatggcttcctaccgttcaaggaaatctcgcgcagctacttcaccccc
ggtgtctcgcccagccaggcccgcatcaatgaggtgatcaaggaaggccaggaactgctg
gttcaggttgaaaaggaagagcgcggcaacaagggcgctgccctgaccaccttcgtctcg
ctggctggccgctatgtggtgctgatgcccaacaacccccgtggcggtggcgtttcgcgc
cgcatcgagggtgaggaccgcgccgagctcaaggaggcgatggaccagctggagtacccg
aacggcatgtccatcatcgcgcgcaccgccggcatcggccgcaccgcgcccgaactgcag
tgggacctgaactacctgctgaaattgtggaatgccatcgacggcgccgccaagggtggc
aagggcgccttcctgatctaccaggaatcgtcgctcgtcatccgcgcgatccgcgactac
ttcaacaacgacatcggtgacatcctcatcgataccgacgacatctacgaacaggcgcag
cagttcatggcgcacgtcatgcccgagcatgccgcccgcgtgaagcgctaccgcgacgac
gccgccctgttcagccgcttccagatcgagcaccagatcgaatcggcctacgcccgcacc
gtgcaactgccctcgggcggcgccatcgtgatcgaccacacagaagcgctggtcagcgtg
gacgtgaactcggcccgcgccatcaagggcggcgacatcgaggaaaccgccacccgcacc
aacctggaagccgccgacgaagtggcgcgccagatgcgcctgcgcgacctgggcggcctg
atcgtcatcgacttcatcgacatggaagagtcgaagaaccgccgcgaagtggaaaaccgc
ctgcgcgacgcgctgcgccaggaccgcgcccgcgtgcagttcggcaccatcagcaagttc
ggcctcatggaaatgagccgccagcgcctcaagcccgccttgagcgaaggctcgtccatc
ccctgccctcgctgcggcggctcgggccacatccgcgacaccgaatcgtcggccctgcag
atcctgcgcatcattcaggaagaatcgatgaaggacaacacggccgccgtgcactgccag
gtgccggtggaagtggcttcgttcctgctgaacgagaagcgcaccgagatcgccaagatc
gaactcaagcagcgcgtggccgtgctgatggtgcccaacaagacgctggaaacccccaac
taccgcctggagcgcctcaagcacgacgacccgcgcctggaccacatcgaagccagctac
aagcttgctgaagaagtggaagaccccaccgctgtgacgcgccgctcacaagaacccacc
aacaagcagacgccggtgatcaagggcgtgttgcccgacgcacccgcccctgtggccgag
ccccgtgccgaaggcgccgcccgcccaccgcgcgctggccagcgccctgccgctgcgacc
gcgccggcccccgcccccgtggcaaccccggccccggctgcggccgccccccaagagcaa
ggcttctttgggtggatcaagagcctgttcggcgttggcaccacgccggcagcccctgcc
cccgtggccgcgcccgcaccggcagcagccccggagacccccgcccgtggcgaaccccgc
cgcgatggccgcaacggtgaaggccgtggccgccgtggtggccgcgatggcaaccgggac
ggccagcgcgaaggcgcaccccgtgacggcaaccgcgaaggcaacggcgaaggccggggc
cgccgtggcgaacgctcggccgaaggccgcgcaccccgcgacgccgagcgccgccccgaa
ggcgaggcccgcgaaggccaaggccgcgacggtggccgcaatggacgcgaagggcgcgaa
ggaggtggccgtggccgccgggacaacaccgagccgcgcaaccagaacgcaggcctgaac
ggtgataacaacaccgccgtgaccgcacaggtggaaggccccaacgctggcaaccccggc
aacagcacagaaggccaacccacccagcagccccgtggcgaacgcggcccacgacgtgaa
cgtggtgatcgcggcaaccgtggcgaacgtggggagcgcacaccccgcgcggtggaagcc
caggaaacggccgctgccgcagtgcctggcgactttgccgacacagcgccactggctgcc
ttgcccgatctggacctgtccggcaacgacgctcagcccaacggcaatggtgccgctgca
gaagaacagcgccgcgagcgccgttcgcgcgaccgctacggccgtgaccgccgcgagcgt
ggcgaacgcggtccgcgtgacaacaacggcaatgccgaagccgccgcaccggcgatgctg
gatttcgaccccacgcaggccgagccagcacccgcgcaggacgaagcgccacgccgcagc
tacttctcggcccctgcagcggagccatcggcagcggcacccgcgccagcgcctgtggca
gcacccgtgcccgccccggcccacgcaccgacccccgttgctgcacctgtcgccgcgccg
gtagcagccccggtggcggccgcgccagcacctgtggcggcaccagcccctgttgcagca
tctgcacccgctgcggcacccgtcgcaccggtggtacccgctgcgaacggtctgccccgc
gtccaggcgttcgcactgcccatcgacgagctgcagcaagtggctgccgcatcgggcctg
cagtgggtcaactccgacatggacaagatcgctgctgtgcaagctgcgattgccgccgag
cccaagcccatccgcgtgccgcgcgagcgcccacctgcggtagtgctggacgaaggcccg
ctggtgctggtggaaacccgccgcgacctgtctgccatgaagctgccgtttgagcagact
ccctcggcctga
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