Acidovorax sp. JMULE5: EXV95_18685
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Entry
EXV95_18685 CDS
T10357
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
aciv Acidovorax sp. JMULE5
Pathway
aciv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aciv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EXV95_18685 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aciv03021
]
EXV95_18685 (rpoB)
03400 DNA repair and recombination proteins [BR:
aciv03400
]
EXV95_18685 (rpoB)
Enzymes [BR:
aciv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EXV95_18685 (rpoB)
Transcription machinery [BR:
aciv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EXV95_18685 (rpoB)
DNA repair and recombination proteins [BR:
aciv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EXV95_18685 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
QLA82490
LinkDB
All DBs
Position
4069179..4073291
Genome browser
AA seq
1370 aa
AA seq
DB search
MAYSYTERKRIRKSFGTRDSVLEVPYLLQMQKDAYTAFLQADKAPQKRTIEGLQAAFDAA
FPIVSHNGFVEMKFIEYNLAKPAFDVRECQTRGLTFASAVRAKVQLIIYDRESSTSQSKV
VKEVKEQEVYMGEVPLMTDKGSFIINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFS
ARIIPYRGSWLDFEFDPKDILYFRVDRRRKMPVTILLKAIGLNPESILANFFVNDNFRLM
DSGAQMEFVSERLRGEVARFDITDKSGKVVVAKDKRVTARHTRELEQSGTTHISVPEDFL
IGRVVARNIVDADTGEIIAKANDELTEALLKKLRSAGVQDVQCIYTNELDQGAYMSQTLR
IDETVDEFAARVAIYRMMRPGEPPTEDAVQALFQRLFYNPDTYDLSRVGRMKFNAKIGRD
ESTGPMVLSNEDILAVVKILVDLRNGNGEVDDIDHLGNRRVRCVGELAENQYRTGLARIE
KAVKERLGQAEQEPLMPHDLINSKPISAALKEFFGASQLSQFMDQTNPLAEITHKRRVSA
LGPGGLTRERAGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLALYARLNEYGFIETPYR
RVVDGKVTNEIDYLSAIEEGKYVIAQANAVLDKDGRLTGDLVSAREKGESILCGADRVQY
MDVSPAQIVSVAASLVPFLEHDDANRALMGANMSRQAVPVLRPEKPLVGTGIERVAAVDS
GTVVTATRGGVVDYVDATRIVIRVNDAEAVAGEVGVDIYNLIKYQRSNQNTNIHQRPIVK
KGDMLVKGDVIADGASTDFGEIAIGQNMLIAFMPWNGYNFEDSILISERVVAEDRYTSIH
IEELVVMARDTKLGAEEITRDIPNLSEQQLNRLDESGIIYVGAEVQPGDTLVGKVTPKGE
TTLTPEEKLLRAIFGEKASDVKDTSLRVDQGSSGTVIDVQVFTREGIQRDKRAQQIIDDE
LKRFRLDLNDQLRIVEADAFDRIEKLLNGRVANGGPQKLAKGTKIDKAYLSSVEKFHWFD
IRPAEDEVATQLESIKNALEQTRHSFDLAFEEKRKKLTQGDELPAGVLKMVKVYLAVKRR
LQPGDKMAGRHGNKGVVSKIVPVEDMPYMADGTPADIVLNPLGVPSRMNIGQVLEVHLGW
AGKGIGQRIGNMLQEQAKAADMRKFLEEVYNSRGRTEDLSLLSDDDVMAMAANLTNGVPY
ATPVFDGASEEEIKDMLKIAYPDDIAERKGLTPTRTQAYLFDGRTGERFERPTTIGYMHY
LKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYVLQEMLT
VKSDDVVGRTKVYESIVKGEHAIEAGMPESFNVLVKEIRSLGLDIELERS
NT seq
4113 nt
NT seq
+upstream
nt +downstream
nt
atggcctattcctacaccgaacgcaagcgaattcgcaaaagtttcggcacccgcgatagc
gtgctcgaagttccttatctgctgcagatgcagaaggacgcctacaccgctttcttgcag
gctgataaagcaccccagaaaagaaccatcgaaggccttcaggctgcattcgacgctgcc
tttcctatcgtctcccacaacggttttgtggagatgaagttcattgaatacaacctggcc
aagccggcttttgatgtgcgcgagtgccagacccgtggtctgaccttcgcctcggctgtg
cgcgccaaggtgcaactgatcatctatgaccgcgagtcctcgacgtcgcagtccaaggtg
gtcaaggaagtgaaggagcaagaggtctacatgggtgaagtgcccctgatgaccgacaag
ggctcgttcatcatcaacggtaccgagcgtgtgatcgtgtcgcagctgcaccgttcgcct
ggtgtatttttcgagcatgacaagggcaagacccacagctcgggcaagctgctgttctcg
gcgcggatcattccctaccgtggttcgtggctcgatttcgagttcgaccccaaggacatc
ctgtatttccgcgtggaccgtcgccgcaagatgccggtcacgatcctgctcaaggccatc
ggcctgaatccagaatctatcctggcgaacttcttcgtcaacgataacttccgtctgatg
gacagcggtgcacaaatggaatttgtgtcagagcgtctgcgtggtgaagtggcccgtttt
gacatcaccgacaagtccggcaaggtcgtagtggccaaggacaagcgcgtgacggctcgc
cacacccgagaactggaacagtctggtaccacgcacatcagcgtgcccgaagacttcctg
atcggtcgcgtcgtggcccgcaatattgtggatgcggacactggtgagatcatcgccaag
gcgaatgacgagctgaccgaagcgctgctcaagaagctgcgcagcgctggtgtgcaagac
gtacagtgcatctacaccaatgaactcgaccagggggcgtacatgtcgcagaccctgcgc
atcgacgaaacggtggacgaatttgctgcgcgcgtggccatctaccgcatgatgcgcccc
ggcgagccgcctacggaagacgccgtgcaggccctgttccagcgcctgttctacaacccc
gacacgtacgacctgtcgcgtgtgggccgcatgaagttcaacgccaagattggccgcgac
gaatccactggccccatggtgctgtccaacgaagacatcttggctgtggtcaagattctg
gtggacctgcgcaacggcaacggcgaagttgatgacatcgatcacctgggcaaccgccgc
gtgcgttgcgtgggcgaactggccgaaaaccagtaccgcacgggcctggcacgtatcgaa
aaggcggtgaaagagcgtctgggccaggccgagcaagagccgctgatgccccatgacctg
atcaacagcaagccgatctcggccgccctgaaggaattcttcggcgcctcgcagctgtct
cagttcatggaccagaccaatccgctcgccgaaatcacgcacaagcgccgtgtttccgcc
ctgggtccgggtggtctgacccgcgaacgcgcaggcttcgaagtgcgcgacgtgcacgta
acccattacggccgcgtctgccctatcgaaacacctgaaggccctaacatcggcctgatc
aactcgctggccctgtacgctcggctgaacgagtacggtttcatcgaaaccccttaccgt
cgcgtggtggatggcaaggtcacgaacgaaatcgactacctctcggccatcgaagaaggc
aagtacgtgatcgcgcaggcgaacgccgtgctcgacaaggatggccgtttgacgggtgat
ctggtgtctgcccgtgagaagggtgaatccattctgtgtggtgcagaccgcgtgcagtac
atggacgtgtcgcccgcgcagatcgtgtcggtcgcggcttcgctggtgcccttcctggaa
cacgatgatgcgaaccgcgcgctgatgggcgccaacatgtcgcgccaggccgtgccagtg
ctgcgtcctgaaaagccgctggtgggcacgggcatcgagcgcgtggctgctgtggactcg
ggcaccgtcgtgacggcgacccgtggcggtgtggtggactatgtggatgcgacccgtatc
gtgatccgcgtcaacgatgccgaagccgtggccggtgaagtgggtgtggatatctacaac
ctcatcaagtaccagcgttctaaccagaacaccaatatccaccagcgccccatcgtcaag
aagggcgacatgctggtcaagggtgacgtgatcgccgacggcgcatcgacggacttcggc
gaaatcgccatcggccagaacatgctgatcgcgttcatgccttggaacggctacaacttc
gaagactcgatcctgatctccgaacgcgtggtggccgaagaccgctatacctcgattcac
atcgaggaactcgtggtcatggcgcgcgacacgaagctgggcgccgaagaaatcacgcgc
gacattccgaacctgtcggagcagcaactgaaccgccttgacgagtccggcatcatctac
gtgggcgccgaagtgcaacccggcgatacgctggtcggcaaggtcacgcccaagggcgaa
acgacgctcacgcctgaggagaagctgctgcgcgccatcttcggcgagaaggcttccgac
gtgaaggatacctcgctgcgcgtggaccaaggctcgtcgggcaccgtgatcgacgtgcag
gtcttcacccgcgaaggcatccagcgtgacaagcgcgcccagcagatcatcgacgatgaa
ctcaagcgtttccgcctggacctgaacgaccagctgcgcattgtggaagccgacgctttt
gaccgtatcgaaaagctgctgaacggccgtgtggccaacggcggcccgcagaagttggcc
aagggcacgaagatcgacaaggcctacctgtcgtccgtcgagaagttccactggttcgac
atccgcccggctgaagacgaagtagctacgcaactcgagtccatcaagaacgcgctggag
cagacgcgccacagcttcgacctggcttttgaagaaaagcgcaagaagctcacgcaaggc
gacgagttgccagctggcgtgctgaagatggtcaaggtgtacttggccgtcaagcgccgt
ctgcagccaggtgacaagatggccggccgccacggtaacaagggtgtggtctccaagatc
gttccggtcgaagacatgccttacatggccgacggcacacctgccgatatcgttctgaac
ccgctgggcgtgccctcgcggatgaacattggtcaggtgctggaagtccacctgggctgg
gccggcaagggcattggccaacgcatcggcaacatgctgcaggagcaggccaaggccgcc
gacatgcgcaagttcctcgaagaggtgtacaactcgcgcggtcgcacggaagacctgtcg
ctgctcagcgatgacgacgtgatggccatggctgccaacctgaccaacggtgtgccttat
gcgacgcccgtgttcgatggtgcttcggaagaagaaatcaaggacatgctcaagatcgcc
tacccagacgacattgcagagcgcaagggcctcacgcccacccgcacgcaggcgtacctg
ttcgatggccgtacgggcgagcgcttcgagcgtccgaccaccattggttacatgcactac
ctgaagctgcaccatttggtggacgacaagatgcacgcccgctcgaccggtccttactcg
ctcgtcacgcagcagccgctgggtggtaaggcgcagtttggtggccagcgtttcggggaa
atggaagtgtgggcgctggaagcttacggcgctgcctacgtcctgcaggaaatgctgacc
gtgaagtccgacgacgtggtgggccgtaccaaggtgtacgaatccattgtcaagggcgaa
cacgccatcgaagccggcatgccggaatcgttcaacgtgctggtcaaggaaatccgttcg
ctgggcctggacatcgagctggaacgctcctaa
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