Acidovorax sp. FHTAMBA: AAFF19_15370
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Entry
AAFF19_15370 CDS
T11687
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
acix Acidovorax sp. FHTAMBA
Pathway
acix03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acix00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AAFF19_15370 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
acix03021
]
AAFF19_15370 (rho)
03019 Messenger RNA biogenesis [BR:
acix03019
]
AAFF19_15370 (rho)
Transcription machinery [BR:
acix03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
AAFF19_15370 (rho)
Messenger RNA biogenesis [BR:
acix03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AAFF19_15370 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA_25
Spore_III_AA
S1CSD-TOTE-2
AAA
ResIII
Motif
Other DBs
NCBI-ProteinID:
XAH17502
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All DBs
Position
3272344..3273606
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AA seq
420 aa
AA seq
DB search
MHLNELKALHVSEVLKQAEELEIENTGRMRKQELMFAIIKKRAKAGEQVFADGVLEILPD
GFGFLRSPDTSFTASTDDIYISPSQVRRFNLHTGDMIEGEVRTPKDGERYFALTKLDKVN
DGPPEQNKHKVMFENLTPLFPKEHMRLERDIKSEENITGRIIDIIAPIGRGQRALIVAPP
KSGKTVMMQHIAHAITANNPDVHLMVLLVDERPEEVTEMQRTVKGEIIASTFDEPAARHV
HVAEMVIERAKRLVELKKDVVILLDSITRLARAYNNVVPSSGKVLSGGVDAAALQRPKRF
FGAARKVEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNCEIHLNRRLYEKRVFPAIEL
NKSGTRREELLLAPEILQKTRILRQFMYNMDEIESMELMIKNMKATKTNVDFFDMMRRGG
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgcacttaaacgaactcaaggcactgcacgtgtctgaagtcctgaagcaggccgaagaa
ctcgaaatcgagaacaccggccggatgcgcaagcaggagctgatgtttgccatcatcaag
aagcgcgccaaggcgggcgagcaggtatttgccgatggggttctggaaatcctgcccgac
ggattcggctttctgcgcagccccgacaccagcttcacggccagcacggacgacatctac
atctcgcccagccaggtgcgccggttcaatctgcacacgggtgacatgattgaaggcgaa
gtgcgcacgcccaaggatggcgagcgctactttgccctcaccaagctcgacaaggtcaac
gacggcccgcccgagcagaacaagcacaaggtgatgttcgaaaacctcacgccgctgttc
cccaaggagcacatgcggctggagcgcgacatcaagagcgaagagaacatcaccggccgc
atcatcgacatcatcgcgcccatcggccgcggccagcgcgcgctgatcgtcgcaccgccc
aagagcggcaagacggtgatgatgcagcacatcgcccacgccatcacggccaacaatcct
gacgtgcacctgatggtgctgctggtggacgaacgccctgaagaagtgaccgaaatgcag
cgcaccgtcaagggcgaaatcattgcctcgaccttcgacgagcccgccgcccgccacgtg
cacgtggccgagatggtgatcgagcgtgccaagcgcttggtcgaactgaaaaaggatgtg
gtgatcctgctggactccatcacccgcctggcccgcgcctacaacaacgtcgtgccctcc
agcggcaaggtgctgtcgggcggtgtggacgccgccgcactgcagcgccccaagcggttc
tttggcgccgcacgcaaggtcgaggaaggcggctcgctcaccatcatcgccacggcactg
gtcgataccggcagtcgcatggacgaagtgatctttgaagaattcaagggcacgggcaac
tgcgaaatccacctgaaccgccgcctgtatgaaaagcgcgtgttccccgccatcgaactc
aacaagagcggcacgcgccgcgaggaactgctgctggcgcccgagatcctgcaaaagacc
cgcatcctgcgccagttcatgtacaacatggacgaaatcgaatcgatggagctcatgatc
aagaacatgaaggccaccaagaccaatgtggacttcttcgacatgatgcgacgcggaggg
tga
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