Acidithiobacillus sp. YTS05: MQE22_01885
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Entry
MQE22_01885 CDS
T08616
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
aciy
Acidithiobacillus sp. YTS05
Pathway
aciy03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aciy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MQE22_01885 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aciy03021
]
MQE22_01885 (rpoC)
03400 DNA repair and recombination proteins [BR:
aciy03400
]
MQE22_01885 (rpoC)
Enzymes [BR:
aciy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MQE22_01885 (rpoC)
Transcription machinery [BR:
aciy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MQE22_01885 (rpoC)
DNA repair and recombination proteins [BR:
aciy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MQE22_01885 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
BSH_YknX
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
UTV81386
LinkDB
All DBs
Position
407765..411913
Genome browser
AA seq
1382 aa
AA seq
DB search
MNNLLKLFKQNDRQEEFDAIRIGIASPDKIRSWSYGEVKKPETINYRTFKPEREGLFCAK
IFGPIKDYECLCGKYKRLKHRGVVCEKCGVEVTQARVRRERMGHIELASPVAHIWFLKSL
PSRMGMILDMPLRDIERVLYFEAYVVIDVDLGVTDLQRGQILSEDQYLDALEAYGDQFRA
MMGAEGIRELLKGIPLESEIEQIREELLASNSDTKTKKLAKRLKILESFVSSGNRPEWMI
LEVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPDIIVRNEKRM
LQEAVDALLDNGRRGRAIAGPNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVG
PELRLHQCGLPKKMALELFKPYIFNKLEERGLATTIKAAKRLVEAEKPEVWDILEEVIRE
HPVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLSLEAQL
EARTLMMSTNNILSPANGDPIIVPSQDIVLGLYYMTQERLDAKGQGMRFADSAEVRRAYD
NGEVGMHARITMRFRGERIETTVGRALLSDILPEGLPFAVIDRVLKKKAIAELINTCYRT
LGVKDTVVFADQLMYTGYRMATRAGISFGAGDMVTPPEKDVILARSEDEVKTIQDQYTSG
LVTEGERYNKVVDIWSRATEEVAKAMMDRVSKEKVTLPDGKETEQVSFNSIYMMADSGAR
GSAAQLRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTA
NSGYLTRRLVDVTQDLVVVEHDCGTEEGLPMMALVEGGEVVEALRERVLGRVTAEDILHP
NTGEVAIPRNTLLTEQLLGQLDELGVDALKVRSPLTCKSRYGVCALCYGRDLARGHLVNA
GEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAQSSIDIKQGGLIRYHSSLRSVEHPS
GRHVVVGRNGEIAVTDEQGREKERYKVPYGATILVQDGEAVTPGKRIAEWDPHTRPIVSE
IAGTISLQDAIEGQSVISQTDDITGLSTQAVIDPKQRPASGRDLRPVVLLQDAKGKDLKL
PGTDLPARYYLPPRAIIAVQDGTQVQPGDTLARLPVGTSKTRDITGGLPRVAELFEARRP
KDYAIIAEHHGIVGFGKDTKGKQRLLITDENGDTHEYLIPKGRHVTVYEGERVSPGEPLV
EGQPVPHDILRVLGVQALANYIVDEVQDVYRLQGVRINDKHIEVILRQMLRKVEISHAGD
SSFITGDQVDRARVEEENSALEAAGKEPARFTPMLLGITKASLSTESFISAASFQETTRV
LTEAAVSGRVDDLRGLKENVIVGRLVPAGTGLAYHEHRRRRNRGESLFDGGSESETETVA
AS
NT seq
4149 nt
NT seq
+upstream
nt +downstream
nt
ttgaataacctcctcaagcttttcaagcagaacgatcggcaggaagaattcgatgccatc
cgtattggcattgcgtcgccggacaagatccgctcttggtcctacggcgaagtcaagaag
ccggagaccatcaactatcggaccttcaaacccgagcgcgaaggccttttctgtgccaag
atctttggtccaatcaaggactacgagtgtctttgcggtaagtacaaacgcctcaagcac
cgtggcgtggtctgcgaaaagtgcggtgtggaagtcacgcaggcgcgcgtgcgtcgcgag
cgcatggggcacatcgagctggccagcccagtggcgcacatctggttcctgaagtctctg
cccagccgcatgggcatgatcctggatatgcccttgcgggatatcgagcgggtcctgtat
ttcgaggcctatgtggttatcgatgtcgatctcggggtcacggacctgcagcgcggacag
attctcagcgaggatcagtatctcgatgccctggaagcgtatggtgatcaattccgcgcg
atgatgggcgcagaaggcatccgggaactgctcaagggtatcccgctggaaagcgagatc
gagcagattcgcgaggagcttctcgccagtaactccgacaccaagaccaagaagctggcc
aagcgattgaagatcctcgagtccttcgtcagctctggtaaccgacccgagtggatgatt
ctcgaagtcctgccggtgctgccaccggatctgcgtccgctggtacccttggacggcggc
cgctttgcgacctcggacctgaacgatctctaccggcgggtgatcaatcgtaacaaccgc
ctcaagcgcctgctcgagctgaaggctccggacatcatcgtacgcaatgaaaagcgcatg
ttgcaggaagcggtagatgcgttgctcgacaatggtcgtcgcggacgcgccattgccggt
ccgaacaagcgcccgctcaagtccctggccgacatgatcaagggcaagcagggccgtttc
cggcagaacctgctcggtaagcgtgtcgactactccggtcgttcggtgatcgttgtgggc
ccggagttacgcctgcatcagtgcggcttgccgaaaaagatggcgctggaactgttcaag
ccctatatcttcaacaaactggaagagcgcggactggcgaccacgatcaaggcggcgaag
cgcctggtggaggccgaaaagccggaggtctgggatattctcgaagaggtgatccgcgaa
catccggtcatgctcaaccgtgcgcccactctgcaccgtctgggtatccaggcatttgag
ccggtgctgattgagggcaaggccatccagttgcatccgttggtctgtgctgcctataac
gccgactttgacggtgaccagatggccgtgcacgtaccgctttctctcgaagcgcagctc
gaagcacgtacgctgatgatgtccaccaacaacatcctcagcccggccaacggcgatccg
atcatcgtcccatcccaggatatcgtgctgggcctgtactacatgacccaggaacgtctc
gacgccaaggggcaggggatgcgctttgccgatagtgccgaggtgcgccgcgcctacgac
aacggcgaggtcggtatgcacgcgcgcatcaccatgcgtttccgtggcgaacgcatcgaa
accacggtgggccgagccctgctcagcgacatcctgcccgaaggcttgccgttcgcggtg
atcgatcgggtgctgaaaaagaaggctatcgccgaactgatcaacacctgttaccgcacc
cttggggtcaaggacacggtcgtctttgccgatcaactcatgtacaccggttatcgcatg
gcgacccgcgctggcatctccttcggcgccggcgacatggtcacgccgccagaaaaggac
gtcatcctggcacgctccgaggatgaggtgaagaccatccaggatcagtacacctctggt
ctggttaccgaaggcgagcgctataacaaggtggtcgatatctggtcgcgcgccaccgaa
gaggtcgccaaggcgatgatggaccgggtgagcaaggaaaaggtcaccctgcccgatggc
aaggaaaccgagcaggtctccttcaactccatctacatgatggccgactccggcgcgcgt
ggatcggcggcgcagttacgccagctggccggtatgcgcggattgatggccaagccggat
ggctcgatcatcgaaacgccgatcaccgcgaatttccgcgaagggctgaacgtattgcag
tacttcatttccacccacggcgcgcggaaaggcctcgccgacaccgccctgaaaaccgcc
aactccgggtatcttactcgtcgtctggtagacgtgacccaggatctggtggtggtcgag
catgactgcggcaccgaggaaggtttgccgatgatggccctggtggagggcggtgaggtg
gtcgaagcgttgcgcgagcgcgtgctcgggcgggtgacggcggaggatattttgcatccg
aacaccggtgaggttgccattccgcggaataccttgcttaccgagcagctgcttgggcag
ctcgacgaactgggtgtggatgccctcaaggtgcggtctcccctgacctgtaaatcgcgt
tatggggtctgtgccctttgctacggacgcgatctggcgcgcggccacctggtcaatgca
ggcgaagcggtgggtgtgatcgcggcgcagtccattggtgagcccggcactcagctgacc
atgcggactttccacatcggtggcgcggcaagtcgtgccgcggcgcagagcagcatcgac
atcaagcagggtggcttgattcgctaccacagcagcttgcgctcagtggagcaccccagc
gggcgccacgtggtcgtcggccgtaatggcgaaattgccgtcactgacgaacaaggccgg
gaaaaggaacgctataaggtgccttatggtgccaccatcctagtccaggatggcgaggcg
gtaacgcctggcaagcggattgccgagtgggatccacatacgcgccccattgtcagcgag
atcgcgggtacgatctcactgcaggatgccatcgagggccagagcgtcatctcccagacc
gacgacatcaccggcctgagcacccaggcagtgatcgatcccaaacagcgtccggccagc
ggccgcgatctgcgtcccgtggtccttctacaggatgccaagggcaaggatctcaagttg
ccgggaacggatcttcctgcgcgttactacctgccaccgcgtgcgatcatcgccgtccag
gatggtacgcaggtgcagccgggcgacaccctggcgcgtctgccagtaggcaccagtaag
acccgtgacatcactggtggtttgccgcgtgtggccgagcttttcgaagcccggcgtccc
aaggattatgccattattgccgagcaccacggtattgtcggttttggtaaggataccaag
ggcaagcagcgcttgctgatcaccgacgaaaatggcgatacccacgagtacctcattccc
aagggacgtcacgtcaccgtctacgaaggtgagcgagtcagccccggggaacctttggtg
gaagggcagccggtgccgcacgacattctccgtgtcctgggggtgcaggcattggccaat
tacatcgttgacgaggtccaggatgtctatcgcctccagggtgtgcgtatcaacgataag
catatcgaagtcatcctgcgacagatgctgcgtaaggtagagatcagccatgccggtgac
agtagtttcattactggcgatcaggtcgatcgggcccgggtagaggaagaaaattccgcc
ctcgaagcagcgggcaaggagccggcgcgtttcacgccgatgctgctcggtatcaccaag
gcgagtctgtccacggagtccttcatctctgcggccagcttccaggaaaccacccgcgtt
ctcaccgaggccgcggtttctggtcgggtcgatgatctgcgtggcctgaaggagaacgtg
attgttggtcgtctggtgcctgcgggcactgggcttgcttatcacgagcaccgccgtcgc
cgcaatcgtggcgagagtctgttcgacggtggcagcgagagcgagacggaaacggtcgct
gccagctga
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