Acidithiobacillus sp. YTS05: MQE22_02145
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Entry
MQE22_02145 CDS
T08616
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
aciy
Acidithiobacillus sp. YTS05
Brite
KEGG Orthology (KO) [BR:
aciy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
aciy03009
]
MQE22_02145 (rlmD)
Enzymes [BR:
aciy01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
MQE22_02145 (rlmD)
Ribosome biogenesis [BR:
aciy03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
MQE22_02145 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_25
Methyltransf_15
TRM5-TYW2_MTfase
Methyltransf_31
Methyltransf_11
UPF0020
MTS
Motif
Other DBs
NCBI-ProteinID:
UTV81438
LinkDB
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Position
complement(450868..452190)
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AA seq
440 aa
AA seq
DB search
MTRPKPIRGTAPCTLRIDSLDGEGVGVARADGKVTFVAGALPGEEIVAQVYEGTPRYDRA
RLLEVQRAASQRVTPRCPHAGVCGGCSLQHLEASAQIAVKQRHLEEQLWQIGKVRPERIL
PPIAGPSFGYRRKARLSVRVPATRGVLVGFREYHSSYVAEMESCAVLDPRVGERILDLRA
LIARLHNPRIIPQIEVACSDEVAALVFRHLEALPPTDEELLRLFGQTHNLQIWLQSAGPD
SLRCISESDPQALFYDLPEYDVRLAFSPLVFTQVNASINPVLVHRALALLDPQVGEHIAD
LFCGLGNFTLPIARAGAKVLGIEGERRLTALGSANAAANGLAERVEFRCADLAQESLDEV
LAGHPVRKLLIDPPRSGAIEILKGIGPTIERLVYVSCNPDTLARDAGYLVQQLGFRLRCA
GVVNMFPHTAHVESVALFTR
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atgactcgtcccaagcccatacgcggcacagcgccctgtactctgcggattgactccctg
gatggggagggggtgggcgttgctcgggccgacggcaaagtcactttcgtcgccggtgcc
ctgccaggggaagagatcgtagcgcaggtctacgaaggcactccgcgttacgatcgtgcc
cgcttgctggaggtgcagcgggccgcatcacaacgggtgacgcctcgctgcccccatgcc
ggagtctgcggcggctgcagcctgcaacacctggaagcgtcggcacagatagcggtcaaa
caacggcatctggaagaacaactctggcagatcggcaaggtgcggccggagcgcattctg
ccacccattgccgggccgagcttcggctatcgccgcaaggctcgtctctcggtccgggtg
ccggccacgcgcggggtattggtgggctttcgcgaataccattccagctatgtggcagaa
atggagagctgcgcggtacttgatccccgagtgggagaacggattctcgacctgcgcgcg
ctgatcgcgcgcttgcacaacccgcgcatcattccgcaaatcgaggtggcttgcagtgac
gaagttgcagcactggtgtttcgccatctggaggcgctgccccccacggatgaggaattg
ctccgcctctttggacagacccataacctgcagatctggttgcagagtgcgggacccgat
agcctgcgttgcatcagcgagagcgatccccaggcattgttctacgacttgccggaatat
gacgtccgcctcgccttctctcctctcgtcttcacccaggtcaacgccagcatcaatccg
gtcctcgtccaccgcgccctggcgctgctcgatccccaagtgggggagcacattgccgat
cttttctgcggtctggggaattttaccctgcccatcgcgcgcgccggggcgaaggttctg
gggatcgagggagagcgtcgcctgacggccttgggcagcgccaacgcggcagccaatggc
ctggcggagcgagtggaatttcgctgcgcagaccttgcccaggagagtctcgatgaagtg
ctggccggacacccggtgcgcaaacttcttatcgatcctccgcgcagcggcgccatcgag
atcctcaagggcatcggtcccaccatcgaacgtttggtctatgtgtcctgcaatccggat
accctcgctcgggatgccggatatctggtgcagcagcttggctttcgtttgcgctgcgca
ggcgtcgtcaacatgtttccgcataccgcccatgtcgagtccgtcgccctctttacccgc
tga
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