Acidithiobacillus sp. YTS05: MQE22_10300
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Entry
MQE22_10300 CDS
T08616
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
aciy
Acidithiobacillus sp. YTS05
Pathway
aciy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aciy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MQE22_10300 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aciy03400
]
MQE22_10300 (mfd)
Enzymes [BR:
aciy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MQE22_10300 (mfd)
DNA repair and recombination proteins [BR:
aciy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MQE22_10300 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
RecG_dom3_C
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
UTV82351
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All DBs
Position
2092313..2095765
Genome browser
AA seq
1150 aa
AA seq
DB search
MDWLGSLVLQPGKTATLPPAPGAAQALLAAALQRRLQRPILLIVNASRAIEEWQREWQFF
APELPAPLVFPDREVLPYDRLNPPAEISTARLATLAALPHWRGLIIAPASAVLQFLPPPS
HLDRHALWLHLGARLPLESFRQRAIDAGYQSVSEVSEAGEIAWRGGIIDIFPSGSPLPYR
IELFGDEIDSIRAFDVETQRSLGKVEKVELLPAREVPTASEDLQRFRAQFRARFSGDPQQ
AEIYRAASRNSIPAGAEQYLPLFFEACGDISNYLPKDSIVLEESGLAAAVQQLRQEWQER
YAERSSDRAHPILRPDELLLSEDSWQQRLAAYPILRLSEQVQGEAQGFLPPPSLQGNSEN
PLLGLERFLQELPGGARVVLAAESAGRAEAVGEHLQRLGVPVQRVGNWSEFSAGSASLAL
AVAPLERGLLHQQRGRIDLALISEAQIFGDRVFAQRRGGRARQRSMENLLRDLGELQPGD
VVVHEDYGIGRFLALDTPFAGQGDVNEYMSIAYAGDAKVYVPVEQLDRVSRFVGNSEEIE
LSRLGNARWSKAKAKARQKAIDAASELLDIYARRAARPGRSFPAPDDAYWDFVSRFPFEE
TPDQQAAIDAVLDDLQRPHPMDRLVCGDVGFGKTEVALRATFLVAHSGAQVAILVPTTLL
AQQHFENFRDRFAGLPIRVAMLSRFQKGKERSAILADTAAGNIQVLIGTHRLLQGDVQFA
DLGLLILDEEHRFGVRHKEKIKALRSEVDVLTLTATPIPRTLNLSLAGLRDLSLIATPPQ
RRQPVRTFVQEFAEDTIREACQRELHRGGQIYYLHNEVQDIERSGKLLQRLLPEARIRIA
HGQMPETELEAVMLDFYHQRFDLLLCTTIIESGIDNPRANTMLIDRADRFGLAQLHQLRG
RVGRGHQRAYCYLFTPDPRAMTDDAKRRLDAIQSLEELGVGFALASHDLEIRGAGELLGD
AQSGHMDEVGFTLFMEWLNDAVAAIRAGKDPQSLAEKQAEGPQIHLNTPALIPSDYLPDV
QLRLQLYKRLANLRKSEGIGAIMVEMVDRFGTLPDAVKTLLCQTQLRILAESLGITAIDA
GPQGARLTLSARHRLPVDRLLQKIQKESQTFQLEGQDRLRIRRTLPDGQTRCEALLTLID
ELNGPDSSKE
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atggattggctcgggtcactggtcctccaacccggaaaaaccgctaccctgccgccggcg
ccgggggccgctcaggccctgttggcggcggccctacaacgccgcttgcagcgcccgatc
ctgttgatcgtcaatgccagccgcgcgatagaagaatggcaacgggaatggcaatttttc
gcgccggaattacctgcaccgctggtttttcccgatcgggaagtgcttccttacgatcgc
ctgaatccgccggccgagatcagtaccgcgcggctggccactctcgcggccctgccgcac
tggcggggactgatcatcgccccggccagcgcagtgctgcagtttctgccgccaccgagc
catctcgatcgtcatgcgctgtggctccacctgggggcgcgcttgcccctcgaatccttc
cgccagcgtgccatcgatgccggctatcagagcgtaagcgaggtgtcggaagcaggggaa
atcgcctggcgcggtggcatcatcgatattttcccgagcggcagccctcttccctatcgg
atcgagctttttggcgacgagatcgacagcattcgtgccttcgatgtggaaacccagcgc
agtctcggcaaagtggaaaaggtagagttgctgccggcacgcgaagttccgactgccagc
gaggatctgcaacgctttcgcgcacagtttcgcgcccgcttcagcggcgacccgcaacag
gcggagatctaccgtgccgccagtcgcaatagtataccggcgggtgccgagcaataccta
cctctgttttttgaagcttgcggcgacatcagtaattatctgccgaaggacagcatcgtg
ctggaggagtccgggcttgcggccgcagttcagcaattgcgccaggaatggcaagaacgc
tatgccgagcgcagcagcgatcgtgcccatcccatcctgcggcctgacgaactgttgctg
agcgaggactcttggcagcaacgattagcggcctaccccattttgcggctcagcgaacag
gtgcagggcgaggcgcaaggctttctgcctccgccttccctacagggcaacagtgaaaat
cctttgctcggcctcgagcgctttctacaagagcttcccggtggtgctcgcgtagtgctg
gcggcggaatccgctggacgcgccgaagcggtgggcgagcacctacagcgcctgggcgtc
ccggtgcaacgagtcggcaactggtccgaattttccgctgggtccgcctccctcgccctc
gcggtggcgccgctggaacggggactgttgcatcagcagcggggacgtatcgatctagcg
ttgatctcggaagcgcagatctttggcgatcgggtgtttgcccagcgccgtggcggccga
gcacgccagcggagcatggaaaatctgctacgcgatctgggagaactgcagcccggcgat
gtggtagtccatgaggattacggcatcgggcgctttctggcgctggacaccccctttgcc
gggcaaggagacgtcaacgagtacatgagtattgcctatgccggcgatgccaaggtctat
gtaccggtggaacaactcgaccgcgtcagccgctttgtcggcaacagcgaggaaatcgag
ctatcgcgtctgggaaatgcgcgctggagcaaggccaaggccaaggcgcgacagaaggcg
atcgatgccgccagcgagctgctcgacatctacgcgcgccgcgccgcgcgccctggaagg
agcttcccggcgccggacgacgcctattgggactttgtttcccgctttccctttgaggaa
acaccggaccagcaggccgccatcgatgccgttctcgacgatctgcaacggccgcatccc
atggaccgcctggtctgcggcgacgtcggttttggcaagaccgaggtggccctgcgtgcc
accttcctggtcgctcacagcggcgcccaggtggccattcttgtacccaccaccctcctc
gcccagcaacatttcgaaaactttcgcgatcgctttgccgggctgcccatccgcgtcgcc
atgctctcccgttttcagaagggcaaggaacgtagcgcgatccttgcggataccgccgcc
ggcaacattcaggtcctcattggcacccatcgcctgctccagggcgatgtgcaatttgcc
gacctgggactcctgattctcgatgaggagcatcgctttggcgtgcgccataaggaaaag
atcaaggccctgcgcagtgaggtggatgtactcaccctgacggcaacccccatcccccgc
acgctgaatctttccctggcgggactgcgcgacctgtcgctgattgccacgccgccgcag
cgccggcaaccggtacgcacctttgtgcaggaatttgccgaagacaccattcgcgaggcc
tgccaacgcgagctgcatcgcggtgggcaaatctactatctgcacaacgaagtacaggat
atcgagcgcagcggtaaattgctgcaacgcctgctgccggaggcgcgcatccgcattgcc
cacgggcagatgccggagaccgaactggaggcggtgatgctcgatttttatcatcaacgc
ttcgatctgttactctgcaccacgatcatcgaatcgggcatcgacaatccgcgtgccaac
accatgctcatcgatcgtgccgaccgcttcggcctggcgcagctgcatcagctgcggggg
cgcgtcgggcgtggacatcagcgggcctactgctatctcttcacccccgatccacgcgcc
atgactgacgacgccaaacgacgcctcgacgccatccagtccctggaggagcttggtgta
gggtttgctctggccagtcatgatctggagattcgtggtgccggcgagctcctgggcgat
gcccagagcggacacatggatgaagtgggctttaccctgttcatggagtggctgaacgac
gccgttgccgccatccgcgccggcaaggatccgcaaagtctggcggaaaaacaggcggag
gggccacagatccatctcaacaccccggcgctcatcccctccgattacttgcccgacgtg
caactgcgtctgcagctctataaacgcctggccaatctgcgcaagagcgaggggattggt
gcgatcatggtagagatggtggatcgctttggcaccctgccggatgccgtcaagaccctg
ctctgccagacgcaactgcggattctcgccgagagcctgggcattaccgctatcgacgcc
ggaccacagggcgcccgcttgaccctgagcgcacggcatcgcttgccagtggaccgcctc
ttacagaagatccagaaggaatcgcagaccttccagctcgagggtcaggaccgcctgcgc
atccgtcgtaccctgcccgacggccagacgcgatgcgaagcccttcttacgctcatcgac
gaactcaatggccctgactcaagcaaggagtaa
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