Acinetobacter sp. Tol 5: TOL5_02650
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Entry
TOL5_02650 CDS
T11084
Symbol
rpoC
Name
(GenBank) RNA polymerase beta prime subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
aciz Acinetobacter sp. Tol 5
Pathway
aciz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aciz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
TOL5_02650 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aciz03021
]
TOL5_02650 (rpoC)
03400 DNA repair and recombination proteins [BR:
aciz03400
]
TOL5_02650 (rpoC)
Enzymes [BR:
aciz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
TOL5_02650 (rpoC)
Transcription machinery [BR:
aciz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
TOL5_02650 (rpoC)
DNA repair and recombination proteins [BR:
aciz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
TOL5_02650 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
BCX72065
LinkDB
All DBs
Position
300856..305049
Genome browser
AA seq
1397 aa
AA seq
DB search
MKDLLDIMRKKTDSDGHAPVEFDRIRIGLASPEMIKSWSHGEVKKPETINYRTFKPERDG
LFCAKIFGPVKDYECLCGKYKRMKYKGVICEKCGVEVTTAKVRRERMGHIELASPVAHIW
FLKSLPSRIGLLLDMTLRDIERVLYFESYVVTDPGMTPMEKYQLLNDEEYFTALEEHGDE
FSAKMGAEAVQDLLKDIDLEAEISRLREEIPNTTSETKLKKASKRLKLMEAFKESNNKPE
WMVMNVLPVLPPDLRPLVPLEGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNE
KRMLQESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVI
TVGPSLRLHQCGLPKKMALELFKPFIFAKLQASGQATTIKAAKKMVERETPEVWDVLASV
IRQHPVMLNRAPTLHRLGLQAFEPILIEGKAIRLHPLVCAAFNADFDGDQMAVHVPLTLE
AQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYITRDAVNAKGEGMVFADTHEVNR
ALATGQVDLHARVKARVHQTVIDDNGNREHQTIVVDTTPGRCLLWEVVPEGMDFQQINVE
MTKKNISKLINSCYRKLGLKDTVIFADQLMYLGFRQATRSGVSVGMEDMLIPPQKQAIIE
KAEVEVREIEQQFEQGFVTAGERYNKVVDIWARTNDQVAKAMMDNLSFTTVKNKQGEDEK
QKSFNSIYMMSDSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIKANFREGLTVLQYFIS
THGARKGLADTALKTANSGYLTRRLVDVAQDLVITEPDCGTYDGLVMTPFIQGGDVIENL
GARVLGRVLAEDVKKPGTDDVLLPRNTLIDEKLATFLEDNGVDEVKVRSVVNCASTFGVC
AKCYGRDLARGHLVNPGESVGVMAAQSIGEPGTQLTMRTFHVGGAASRTSAANSVQVRNK
GTVRFHNVKTVQHAKGHLVSVSRSGEIGIADDLGRERERYKLPYGASILIKDGQPVEGGG
IVATWDPHTHPLVTEVAGKARFSQIADGVTATSKTDDATGMTTVEILPVTARPASGKDLR
PAIVLDTTDGGEQFYFLPQNTIVTVRDGETIGVGDVIGRVPQETSRTRDITGGLPRVADL
FEARKPKEHAILAEISGVVSFGKETKGKNRLVITPDDGSEIYEELIPKWRTINVFEGEHV
NRGETISDGPQNPHDILRLKGEVALTNYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKV
DITDGGDTSFIKGEQVDYIRVVGENQAVLAQNKFPAKYERQLMGITKASLSTDSFISAAS
FQETTRVLTEAAVTGKEDDLRGLKENVVVGRLIPAGTGLAYHLERRRQEAEAAEHELVND
FSEVDQAFSQALNEDSF
NT seq
4194 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacttgctcgatatcatgcgcaaaaagacggactcagacggtcatgctccagta
gagtttgatcgcatccgtattggtcttgcgtcaccagaaatgattaagtcatggtctcac
ggtgaagttaaaaaaccagaaaccattaactatcgtacgtttaagccagaacgtgatggt
ttattctgtgccaaaatctttggtccagtaaaagattacgaatgcttgtgcggtaaatac
aagcgtatgaaatacaaaggcgtcatttgtgaaaaatgtggcgttgaagtaacaactgcg
aaagttcgtcgtgagcgtatgggtcacatcgaattggcttctcctgttgctcatatttgg
ttcttgaaatcattaccaagccgtatcggtttacttcttgatatgactttgcgtgatatc
gaacgtgtattgtatttcgaatcttatgtggtgactgatccaggcatgacgccaatggag
aagtaccaacttcttaatgatgaagaatactttactgcgttagaagaacacggtgatgaa
ttcagcgctaaaatgggtgctgaagcagttcaagacttgttgaaagatattgatcttgaa
gctgaaatttctcgtttacgtgaagaaattccaaacacaacttcagaaactaagcttaaa
aaagcgtctaaacgtttgaagttgatggaagcgttcaaagagtcaaacaacaagccagaa
tggatggtgatgaatgtacttcctgtacttccacctgatcttcgtccgttagtaccgctt
gaaggtggtcgttttgcgacttctgacttgaacgatctttaccgtcgtgtgattaaccgt
aacaaccgtttaaaacgtcttcttgaccttgctgcgccagacattatcgtacgtaacgaa
aaacgtatgttacaagagtctgtcgatgcattgttagacaacggtcgtcgtggtcgtgcg
attacaggttcgaacaaacgtccgcttaaatctttggctgatatgatcaaaggtaaacaa
ggtcgtttccgtcaaaacttacttggtaagcgtgttgactattcaggtcgttcggtgatt
accgtaggtccatcattacgtttgcaccaatgtggtcttccaaagaaaatggcacttgaa
ttattcaagccattcatttttgcgaaattacaagcttcaggtcaagcaacaaccattaaa
gctgcgaagaaaatggttgagcgtgaaacaccagaagtatgggacgttcttgcatctgta
attcgtcagcatcctgtaatgttgaaccgtgcgccaacacttcaccgtttaggtcttcaa
gcgtttgaacctatcttgattgaaggtaaagcgattcgtttacacccactcgtatgtgct
gcgtttaacgccgacttcgatggtgaccaaatggcggttcacgtaccattaacacttgaa
gctcagttagaagctcgtgcgttaatgatgtcgacaaacaacatcttgtcacctgcaaat
ggtgagccaatcatcgtaccttctcaggacgttgtattgggtctttactacatcacacgt
gatgcagtgaacgccaaaggtgaaggcatggtgtttgcggacacacatgaagtaaaccgt
gcacttgcgacaggtcaagttgatttacatgctcgtgttaaagcgcgtgtacaccaaaca
gtgattgatgacaacggtaaccgtgaacatcaaactattgttgtagatacaacaccgggt
cgttgcttactttgggaagttgttcctgaaggtatggatttccaacaaatcaacgtagag
atgaccaagaaaaacatctctaaattgattaactcttgctaccgtaaattaggtttgaaa
gatactgttatctttgctgaccaattgatgtacttgggcttccgtcaagcaacacgttca
ggtgtttctgtgggtatggaagacatgttgattccaccacaaaagcaagcaattattgaa
aaagctgaagttgaagttcgtgaaattgaacaacaattcgagcaaggtttcgtaactgct
ggtgagcgttataacaaagttgtcgacatttgggcgcgtaccaacgaccaagttgcaaaa
gcgatgatggataacttgtcattcacaactgttaaaaataaacagggtgaagatgagaag
caaaaatcattcaacagtatctacatgatgtctgactctggtgcccgtggttcggcagct
cagattcgtcagcttgcaggtatgcgtggtttgatggctaaaccagatggttcgatcatt
gaaacaccgattaaagcaaacttccgtgaaggtttgacagtacttcagtacttcatttca
acacacggtgcgcgtaaaggtttggcagatacagcacttaaaactgcgaactcaggttac
ttaacacgtcgtcttgtcgacgtagcacaagatttggtcattactgagccagattgtggt
acttatgacggtcttgtaatgactccattcattcaaggcggtgatgtcatcgagaactta
ggtgctcgagtattgggtcgtgtacttgctgaagatgtcaagaaaccaggtacagatgat
gtccttcttccacgtaacacattgatcgacgagaaacttgcaacgttccttgaagataac
ggtgttgacgaagttaaagtacgttcagttgttaactgtgcttcaacattcggtgtatgt
gcgaaatgttatggtcgtgacttggctcgcggtcacttggtgaatccaggtgaatctgtt
ggggttatggctgcacaatcaattggtgaacctggtacacagttaaccatgcgtacattc
cacgtgggtggtgctgcaagccgaacttctgctgcaaacagtgtacaagtacgtaacaaa
ggtacagttcgtttccataacgttaaaactgttcaacatgccaaaggtcatttggtatct
gtttcacgttcaggtgaaatcggtattgcggatgacttaggtcgtgagcgtgagcgttat
aaacttccatacggtgcgtcgatcttgatcaaagatggtcaacctgtagaaggcggcggt
attgttgcaacttgggatccgcatacacatccattggtaacagaagttgctggtaaagca
cgtttcagccaaattgctgatggtgtaactgcaacatcgaaaactgatgatgcaacaggt
atgacgactgttgaaatcttacctgtaacagctcgtcctgcttctggtaaagatttacgt
cctgcaatcgtgttggatacaaccgatggcggcgaacagttctacttcttgccacaaaat
acaatcgtgactgttcgtgatggcgaaacgattggtgtgggtgatgtcattggtcgtgta
ccacaagaaacttcacgtactcgtgatattaccggtggtctgccacgtgtagctgacttg
ttcgaagcacgtaagccgaaagagcatgcgatccttgctgaaatttcaggtgttgtaagc
tttggtaaagaaaccaaaggtaagaaccgcttagtgattacaccagatgatggctctgaa
atttatgaagagttgattcctaaatggcgtaccattaacgtgtttgaaggtgagcatgtg
aaccgtggtgaaaccatttctgatggtccacagaacccacatgacatcttacgtttgaaa
ggtgaagttgcattaaccaactacatcgtgaacgaagttcaagacgtttaccgcttacaa
ggtgtaaaaatcaacgataagcatatcgaagtgatcgtgcgtcaaatgttgcgtaaagtt
gacattactgatggcggcgatacaagcttcatcaaaggcgaacaagtggattacatccgc
gttgtgggcgaaaaccaagcggtattggctcagaacaagttccctgcgaagtatgaacgt
caattgatgggtattaccaaagcatcgctttctactgactcgttcatctctgctgcatcg
ttccaggaaaccacacgtgtgttaactgaagcggctgtaacaggtaaagaagatgattta
cgtggcttgaaagaaaacgttgttgtaggtcgcttgattccagcaggtactggtcttgca
taccacttagaacgtcgtcgtcaagaagcagaagctgctgagcatgagcttgtaaatgac
ttctccgaagttgatcaagcattctctcaggctttaaacgaagattctttctaa
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integrated database retrieval system
