Acidovorax sp. KKS102: C380_00935
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Entry
C380_00935 CDS
T02290
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ack
Acidovorax sp. KKS102
Pathway
ack03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ack00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C380_00935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ack03019
]
C380_00935
03400 DNA repair and recombination proteins [BR:
ack03400
]
C380_00935
Enzymes [BR:
ack01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C380_00935
Messenger RNA biogenesis [BR:
ack03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C380_00935
DNA repair and recombination proteins [BR:
ack03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
C380_00935
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
HHH
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
AFU43915
UniProt:
K0HVP9
LinkDB
All DBs
Position
complement(193659..195497)
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AA seq
612 aa
AA seq
DB search
MQDVFGYEEFRGPQQAIVEHVIAGSDALVLMPTGGGKSLCYQVPAIVRQQQGRGVTIVVS
PLIALMHDQVGALHEAGVSAAFLNSTLSYDETQDVELRLQTGDITLLYAAPERLNTPRFL
GLLDSLYHGGHLSLFAIDEAHCVSQWGHDFRPEYRALTVLHERYAGVPRIALTATADALT
RADIVERLQLEGAQHFVSSFDRPNIRYRIEEKKEPLAQLLRFIEREHPEDAGVVYCQSRK
RVEEMSAALVDAGLKSLPYHAGLPAEVRQQNQDRFLREEGIVMVATIAFGMGIDKPDVRF
VAHVDMPKNIEGYYQETGRAGRDGLNADAWMAYGLQDVVNQRRMIDESPASEEFKQVMRG
KLDALLALAEATDCRRVRLLGYFGEHSTPCGNCDNCLNPPAVWDGTDAARKLLSTIYRVQ
QASGLSFGTGHIMDIVRGKDTEKVKQFGHDKLSTFGVGKEYSEAQLRGVLRQLLATGAVG
LQKVMLESGHSFDTLSLTDGSRPVLKGDVPVLLRESTASAPAKRTRRSTAPPAAAANLGP
DAQARFINLKAWRAEVAREHNLPAYVIFHDATLAAIAERNPASLDDLQGISGMGAKKLEA
YGAEVLRVCQQG
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
ttgcaggatgtctttggctacgaggagttccgcggcccgcaacaggccatcgttgagcat
gtgattgcgggcagtgacgcgctggtgctcatgcccacgggcggcggcaagtcgctgtgt
tatcaggtgccagccatcgtgcgccagcagcaggggcgtggggtcaccatcgtggtctcg
ccgctgattgcgctgatgcacgaccaggtgggcgcgctgcacgaggcgggggtgtctgcc
gcgtttctcaactccacgctgagctatgacgagacgcaggacgtggagctgcggctgcag
actggcgacatcacactgctgtatgccgcgcccgagcggctgaacacgccccggttcctg
ggcctgctcgacagtctgtaccacggcggtcacctgtcgctgtttgccatcgacgaggcg
cactgtgtgagccagtggggccacgacttccgccccgaataccgcgcgctcacggtgctg
cacgagcgttatgcgggcgtgccgcgcattgcgctcacggccacggccgatgcgctgacg
cgcgccgacatcgtggagcggctgcagctggagggcgcgcagcacttcgtgagcagcttt
gaccggcccaacatccgctaccgcatcgaggaaaagaaggagccgctggcgcagttgctg
cgcttcatcgagcgcgagcacccggaggacgcgggcgtggtgtactgccagtcgcgcaag
cgcgtggaggagatgtcggccgcactggtggacgcgggcctcaagtccctgccctaccac
gccggcctgcctgctgaggtgcgccagcagaaccaggaccgcttcctgcgcgaggaaggc
atcgtgatggtggccaccatcgcgttcggcatgggcatcgacaagcccgatgtgcgcttt
gtggcgcatgtggacatgcccaagaacatcgaaggctactaccaggagaccggccgcgca
ggccgcgacgggctgaatgccgacgcctggatggcctacggcctgcaggacgtggtgaac
cagcgccgcatgatcgacgagagccccgcaagcgaggagttcaagcaggtgatgcgcggc
aagctcgatgcgctgctggccctggccgaagccaccgattgccggcgcgtgcggctgctg
ggctacttcggggaacactccacaccctgcggcaactgcgacaactgcctgaacccgcct
gcggtgtgggacggcacggatgccgcccgcaagctgctatccaccatctatcgcgtgcag
caggccagcggcctgagctttggcaccggccacatcatggacatcgtgcgcggcaaggac
accgagaaggtgaagcagttcgggcacgacaagctgtccaccttcggcgtgggcaaggag
tattccgaagcgcagttgcgcggcgtgctgcgccagctgctggccaccggggccgtgggg
ctgcaaaaggtgatgctggaaagcggccacagcttcgacacgctgagcctcaccgacggc
tcccgccccgtgctcaaaggggacgtgcccgtgctgctgcgcgaatccacggccagcgcg
cccgccaagcgcacgcgccgcagcacggcaccgcccgccgctgccgccaacctggggccc
gatgcccaggcacgcttcatcaacctcaaggcctggcgcgccgaggtggcacgcgagcac
aacctgcccgcatatgtgatctttcacgacgccacactggctgcgattgccgagcgcaac
cccgcgtccctggacgacctgcagggtatcagcggcatgggggcgaagaagctggaggct
tacggggcggaggtgctgagggtgtgccagcaaggctga
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