Acidovorax sp. KKS102: C380_02125
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Entry
C380_02125 CDS
T02290
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ack
Acidovorax sp. KKS102
Pathway
ack03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ack00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
C380_02125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ack03021
]
C380_02125
03400 DNA repair and recombination proteins [BR:
ack03400
]
C380_02125
Enzymes [BR:
ack01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
C380_02125
Transcription machinery [BR:
ack03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
C380_02125
DNA repair and recombination proteins [BR:
ack03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
C380_02125
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AFU44151
LinkDB
All DBs
Position
449306..453541
Genome browser
AA seq
1411 aa
AA seq
DB search
MKSLLDLFKQFTPDEHFDAIRIGMASPEKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIDLAAPCAHIWFLKSL
PSRLGLVLDMTLRDIERVLYFEAYVVTDPGMTPLKKFSIMSEDDYDAKRKEYGDEFIAKM
GAEGIKDLLESIDIDLSIEKLRGDLTGSEVKVKKNAKRLKVLEAFKKSGIKPEWMVLEVL
PVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNSRLRRLLELKAPEIIARNEKRMLQEA
VDSLLDNGRRGKAMTGANKRALKSLADMIKGKSGRFRQNLLGKRVDYSGRSVITVGPTLK
LHQCGLPKLMALELFKPFIFSRLEAMGIATTIKAAKKEVESGTPVVWDILEEVIKEHPVM
LNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSVEAQMEART
LMLASNNVLFPASGEPSIVPSQDVVLGLYYATRDRINGKGEGLVFADTGEVQRALDAGQV
ELAAKITVRMTEWTKDKATGEFVPSTSLVETTVGRALLSEILPKGLPFSNMNKALKKKEI
SRLINVSFRKCGLKETVVFADKLLQNGFRLATRAGISIAIDDMLVPPQKAGIIERSEKEV
KEIEQQYVSGLVTAGELYNKVVDIWGKAGDEVSKVMMAQLSKQKVTDRHGKEVDQESFNS
IYMMADSGARGSAAQIRQVAGMRGLMAKPDGSIIETPITANFREGLNVLEYFISTHGARK
GLADTALKTANSGYLTRRLVDVTQDLVVTEEDCGTANGSLMRAIVEGGEVIESLRERILG
RTAAEDVLHPENRSVLVEAGVMLDEDLIEELEAAGVDEVKVRTALTCETRYGLCAKCYGR
DLGRGGLINLGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAIASSVEAKSNGVIGFN
ATMRYVSNTKGELVVIARSGEIIIQDEHGRERERHKVPYGATLTVKADQQIKAGTILANW
DPLTRPIITEFAGQTKFENVEEGLTVAKQVDEVTGLSTLVVIDPKRRGAAKVVRPQVKLI
DAQGNEVKIPGTDHSVTIGFQVGALIQVRDGQDVGPGEVLARIPVEGQKTRDITGGLPRV
AELFEARTPKDKGTLAEMTGTVSFGKETKGKVRLQITDPDGKVWEELVPKEKNILVHEGQ
VVNKGESIVDGPADPQDILRLLGIEELSRYIVDEVQDVYRLQGVKINDKHIEVIVRQMLR
RVVVENVGESNYIAGEQVERSEILNTNEALQAEGKIPATYSNLLLGITKASLSTDSFISA
ASFQETTRVLTEAAIMGKKDELRGLKENVIVGRLIPAGTGLAYHQARKAKDAMDDAERRA
IAEAEAAEMAAQSDASDVDSGSVAATDAAAD
NT seq
4236 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcgctactcgacctgttcaagcaattcacgccggacgagcatttcgatgccatc
cgcatcggcatggcttcgcccgagaagatccgttcgtggtctttcggcgaagtgaagaag
cccgagactatcaactaccgcacgttcaagcccgagcgtgatggcctgttctgcgccaag
atttttggtcccatcaaggactacgaatgcctgtgcggcaagtacaagcgcctcaagcac
cgcggtgtgatctgcgagaagtgcggcgttgaagtcacgcagaccaaggtgcgccgcgag
cgcatgggccacatcgatctggctgcaccttgcgcccacatctggttcctgaagtcactg
ccttcgcgcctgggcctggtgctggacatgacgctgcgcgacatcgaacgtgtgctgtac
tttgaagcctatgtggtgaccgaccccggcatgaccccgctgaagaagttcagcatcatg
tccgaggacgactacgacgccaagcgcaaggaatacggtgacgagttcatcgccaagatg
ggcgccgaaggcatcaaggacctgctggagtccatcgacatcgacctgtcgatcgagaag
ctgcgcggcgacctgaccggctccgaagtcaaggtcaagaagaacgccaagcgcctgaag
gtgcttgaggcgttcaagaagtctggcatcaagcccgagtggatggtgctcgaagtgctg
cccgtgctgcccccggacctgcgtccgctggtgcccctggacggtggccgctttgccacg
tctgacctgaacgacctgtaccgccgcgttatcaaccgcaactcgcgtctgcgccgcctg
ctggagctgaaggcccctgaaatcatcgcccgcaacgaaaagcggatgctgcaagaggct
gtcgattcgctgctggacaacggccgccgtggcaaggccatgacgggcgccaacaagcgt
gccctgaagtccctggccgacatgatcaagggtaagtcgggccgcttccgccagaacttg
ctgggcaagcgcgtggactactccggtcgttccgtgattaccgtgggcccaacgctcaag
ctgcaccagtgcggtctgcccaagctgatggcgctggagctgttcaagcctttcatcttc
tcgcgcctcgaagccatgggcatcgcgacgacgatcaaggccgccaagaaggaagtggaa
tccggcacccccgtggtgtgggacattctggaagaggtcatcaaagagcaccccgtgatg
ctgaaccgtgcgcctacgctgcaccgtttgggtatccaggcctttgagcccatcctgatc
gaaggcaaggccatccagctgcaccccctcgtctgcgcggccttcaacgccgacttcgac
ggtgaccagatggctgtccacgtgccgctgtcggtggaagcgcagatggaagcccgcacg
ctgatgctggcctccaacaacgtgctgttccccgcctcgggcgaaccctccatcgtgcct
tcgcaggacgtggtgctgggcttgtactacgccacccgtgaccgcatcaacggcaagggc
gaaggcctggtgttcgctgacaccggtgaagtgcagcgtgcgctggacgccggccaggtc
gaactggctgcaaagatcacggtgcgcatgaccgagtggaccaaggacaaggccacgggc
gaattcgtgccctcgacctcgctggtggaaaccactgtgggccgcgcactgctgtccgag
atcctgcccaagggcctgccgttctctaacatgaacaaggcgctcaagaagaaggaaatc
tcgcgcctgatcaacgtgtccttccgcaagtgcggtctgaaggaaaccgtggtgtttgcc
gacaagctgctgcaaaacggcttccgtctggccacgcgcgccggtatctccatcgccatc
gacgacatgctggtgccgcctcaaaaggccggcatcatcgagcgctccgagaaggaagtg
aaggagatcgagcagcagtacgtgtccggtctggtcacggctggcgagctctacaacaag
gtggtggacatctggggcaaggccggcgacgaagtgtccaaggtgatgatggcccagctg
tccaagcagaaggtcaccgaccgccacggcaaggaagtggaccaggagtccttcaactcc
atctacatgatggccgactccggtgcccgcggctctgccgcccagatccgtcaggtggcc
ggtatgcggggtctgatggccaagccagacggctcgatcatcgagacgcctattaccgcg
aacttccgcgaaggtctgaacgtgctggagtacttcatctccacccacggtgcccgtaag
ggtctggccgacacggcgctgaagactgccaactccggttacctcacccgccgtctggtg
gacgtgacgcaggatctggtcgtgaccgaagaggattgcggcactgccaatggttcgctg
atgcgcgccatcgtcgaaggcggtgaagtgatcgaatcgctgcgcgaacgcattctgggc
cgcacggcggccgaggacgtgctgcaccccgagaatcgctcggtgctggtcgaagctggc
gtgatgctggacgaagacctgatcgaagagctggaagctgctggcgtggacgaagtgaag
gtgcgcacggccctgacctgcgaaacccgctacggcctgtgcgccaagtgctacggccgc
gacttgggccgcggtggcctgatcaacctcggcgaagccgtgggtgtgatcgccgcccag
tccatcggcgagcccggcacgcagctgaccatgcgtacgttccacatcggtggtgccgct
tcgcgtgctgccatcgcgtcgagcgtggaagccaagtccaacggcgtgatcggcttcaac
gccacgatgcgctatgtgagcaacaccaagggcgagctggtggtgattgcgcgttcgggt
gaaatcatcatccaggacgagcatggccgcgagcgcgagcgccacaaggtgccttacggc
gcgacgctgaccgtgaaggccgaccagcagatcaaggccggtacgatcctggccaactgg
gatccgctgacgcgccccatcatcaccgagttcgccggtcagaccaagttcgagaacgtc
gaagaaggcctgacggtggccaagcaggtcgacgaagtgaccggtctgtccacgctggtg
gtgatcgatccgaagcgccgtggtgccgccaaggtggtgcgtcctcaggtgaagctgatc
gacgcccagggcaacgaagtgaagatccctggcaccgaccactcggtgaccattggcttc
caggtcggcgctctgatccaggtgcgtgacggtcaggacgtgggccccggcgaagtgctg
gcgcgtattccggttgaaggccagaagacccgcgacattaccggcggtctgccccgcgtg
gccgagctgttcgaagcccgtacgccgaaggacaagggtacgctggccgaaatgaccggt
accgtgtcgttcggtaaggaaaccaagggcaaggtccgcctgcagatcaccgaccccgat
ggcaaggtgtgggaagagctcgtgcccaaggaaaagaacatcctggtgcacgaaggccag
gtggtgaacaagggtgaatcgattgtggacggcccggccgacccacaagacatcctgcgt
ttgctgggtatcgaagaactctcgcgctacatcgtcgatgaagtgcaggacgtgtaccgc
ttgcagggcgtgaagatcaacgacaagcacatcgaggtgatcgttcgccagatgctgcgc
cgcgtcgtggttgagaacgtcggcgagtcgaactacattgccggcgaacaggtcgagcgt
tccgagatcctcaataccaacgaggcactgcaggccgagggcaagatccccgcgacctac
agcaacctgctgctgggtatcacgaaggcatctctgtccaccgactcgttcatctcggct
gcttccttccaggaaacgacccgcgtgctgaccgaagccgcgatcatgggcaagaaggac
gaactgcgcggtctgaaggaaaacgtgatcgtgggccgtctgatccctgccggtaccggt
ctggcctaccaccaggcacgcaaggccaaggacgccatggacgacgccgagcgccgcgcc
atcgccgaagccgaagccgccgaaatggccgcccagtcggacgcctcggatgtggacagt
ggcagcgtcgctgccaccgacgcagcggcagactga
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