Acidovorax sp. KKS102: C380_03580
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Entry
C380_03580 CDS
T02290
Name
(GenBank) hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ack
Acidovorax sp. KKS102
Brite
KEGG Orthology (KO) [BR:
ack00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ack03016
]
C380_03580
Enzymes [BR:
ack01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
C380_03580
Transfer RNA biogenesis [BR:
ack03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
C380_03580
Prokaryotic type
tRNA splicing ligases
C380_03580
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AFU44441
LinkDB
All DBs
Position
complement(788949..790166)
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AA seq
405 aa
AA seq
DB search
MNYEQLEIPNGVPVKMWTNGVPVEEDAKNQLRNIARLPIVFKHVAVMPDVHLGIGATIGS
VVPTLKAIIPAAVGVDLGCGMMACKTTLTASDLPDNLSGVRTAIERAVPVGMTPKRFGRD
KGSWDTPPAETDRAWAALVDEFDEICEAHPRIKNTNNYKHLGTLGTGNHFIEICLDEHQS
VWVMLHSGSRGVGNAIGTHFIELAKKDAEMNQRNLPDKDLAYFEEGAQYFGDYVKAVGWA
QKFAAANREVMMGRVIAALRKVIPKPFETHIEAVNCHHNYVQRETHFGQDVFVTRKGAVS
AEQGKLGIIPGSMGAKSFIVRGKGNPESFNSCSHGAGRTMSRTKAKKLFTVEDQIKATEG
VECRKDADVIDEIPMAYKNIDAVMAAQEDLVEVVYTLKQVVCVKG
NT seq
1218 nt
NT seq
+upstream
nt +downstream
nt
atgaactacgaacaactcgaaatcccgaacggcgtgcccgtgaagatgtggacgaacggc
gtgcccgtggaagaagacgccaagaaccagctgcgcaacattgcgcgcctgcccatcgtg
ttcaagcacgtggcggtgatgcccgatgtgcacctggggatcggtgcgaccatcggctcg
gtggtgcccaccctcaaggccatcatccccgctgcggtgggggtggacctggggtgcgga
atgatggcgtgcaaaaccacgctcacggccagcgacctgccggacaacctgtctggcgtg
cgcaccgccatcgaacgcgccgtgcccgtggggatgacccccaagcgtttcggccgcgac
aagggaagctgggatacgccgcccgccgagaccgaccgcgcctgggccgcgctggtggat
gagttcgacgagatttgtgaagcgcacccgcgcatcaagaacacgaacaactacaagcac
ctcggaacgctcggaacgggcaaccacttcatcgagatctgcctggacgaacatcagtcc
gtgtgggtgatgctgcactccggctcacgcggtgtggggaacgccatcggcacccacttc
attgagctggccaagaaggacgccgagatgaaccagcgcaatctgcccgataaggacctg
gcgtactttgaagaaggtgcgcagtacttcggcgactacgtgaaggccgtggggtgggca
caaaagtttgccgccgccaaccgcgaagtgatgatgggccgcgtgatcgccgcgctgcgc
aaggtgatccccaagccgttcgaaacgcacattgaggcggtgaactgccaccacaactac
gtgcaacgcgagacgcacttcgggcaagacgtgttcgtgacccgcaagggcgcggtgagt
gcagagcagggcaagctggggatcatcccggggagcatgggcgccaagagctttatcgtg
cgcggaaaaggcaaccccgagagcttcaacagctgcagccacggcgcgggccgcaccatg
agccgcaccaaggccaagaagctgttcaccgtggaagaccagatcaaggcgaccgagggc
gtggaatgccgcaaggacgccgacgtgatcgacgagatcccgatggcttacaagaacatc
gatgcggtgatggcggcgcaggaagacctggtggaagtggtgtacacgctcaagcaggtg
gtgtgtgtgaaggggtga
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