Acidovorax sp. KKS102: C380_04895
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Entry
C380_04895 CDS
T02290
Name
(GenBank) formamidopyrimidine/5-formyluracil/5-hydroxymethyluracil DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
ack
Acidovorax sp. KKS102
Pathway
ack03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ack00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
C380_04895
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ack03400
]
C380_04895
Enzymes [BR:
ack01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
C380_04895
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
C380_04895
DNA repair and recombination proteins [BR:
ack03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
C380_04895
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
C1_2
Zn_ribbon_6
Motif
Other DBs
NCBI-ProteinID:
AFU44696
UniProt:
K0I6X7
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All DBs
Position
1072415..1073230
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AA seq
271 aa
AA seq
DB search
MPELPEVEVTRRSFANAITGARIEAVVMGKPLRWPLGCDPQLLVGQQVGGLRRRGKYLLL
DMEQGLLLLHLGMSGSLRFATDMPEAGAHDHFDLVTNRGTLRLHDPRRFGAVVYAPSDDS
PVAAKLLGGLGMEPLSEEFLLPTFQAGLKKSRMPIKQLLLAGRLVVGVGNIYASEVLFLS
GIRPTTVASRIGAARVQKLHQAIRSVLARAVEMGGSTLRDFSNADGMAGHFQTAANVYGR
DGQPCHACGTAIELIRQGQRSTYFCRQCQRP
NT seq
816 nt
NT seq
+upstream
nt +downstream
nt
atgcctgagttgcctgaagtggaagtgacgcggcgcagttttgctaacgcgatcactgga
gcccggatcgaggcggtggtgatgggcaagcccttgcgatggcctctgggttgcgacccg
caattgctggtgggtcagcaagtgggcggattgcgccggcgaggcaagtacctgttgctg
gatatggagcaaggcctgctgcttctgcatctgggcatgtccggcagcctgcggtttgct
actgacatgccggaagcgggcgcgcatgaccattttgacctcgtcaccaaccgcggcacg
ctgcgcctgcacgacccacgccgatttggcgcggtggtctatgcgccatcagatgattcg
cccgtggccgcgaagctgctgggtgggttgggcatggagcccttgtcagaagagtttctg
ctcccgacttttcaggcgggactcaagaaaagccggatgcccatcaagcaattgcttctg
gcgggacgcttggtggtgggggtggggaatatctatgcctccgaggtgcttttcttgtct
ggcatccgtcccactactgtagcttcccgcatcggcgctgcccgggtccagaagttgcat
caggccattcgttccgtgctggcccgcgctgtagaaatgggggggagcacactgcgcgac
ttttcgaatgccgatggaatggcgggccactttcagacggccgcgaatgtgtatggccgc
gatggtcagccatgccacgcctgtggtacagccatcgagctgattcgccagggacaaaga
agcacttacttctgccggcagtgtcaacgcccctag
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