Acidovorax sp. KKS102: C380_06455
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Entry
C380_06455 CDS
T02290
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
ack
Acidovorax sp. KKS102
Pathway
ack03410
Base excision repair
ack03430
Mismatch repair
ack03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ack00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
C380_06455
03430 Mismatch repair
C380_06455
03440 Homologous recombination
C380_06455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ack03400
]
C380_06455
DNA repair and recombination proteins [BR:
ack03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
C380_06455
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
C380_06455
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
C380_06455
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
AFU45001
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Position
complement(1402438..1404162)
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AA seq
574 aa
AA seq
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MKIIARDIPPRAAWALEQAGVHPLLARLYAARGVQAKDELDDGLGRLLPPSGDQGLKGID
AAARLLADAMAQNQRLIIVADYDCDGATACAVGVRGLRLLGAQNVDYLVPDRVTDGYGLT
ASIARRVAERGADMLITVDNGIASVDGVAEAKALGLQVLVTDHHLPGPELPAADAIVNPN
QPGCPFESKSMAGVGVMFYVLLALRAELRARGVFDAATQPKLDPLLTLVALGTVADVVKL
DANNRRLVAQGLKRIRAGQMPAGIAALFHAAGRKAPVATTFDFGFALGPRINAAGRLADM
TLGIECLLTDDAGRAAELAATLDGINRERRDIESGMREQAMLMAESLFDESEEPPPAISV
FDPDFHEGVVGIVASRIKDKLHRPTFVFAASSAPGKEHELKGSGRSIPGFHLRDALDLVS
KRHPGVILKFGGHAMAAGCTVAEVSFDVFEQAFAQVAQEWLDAATLTRRIETDGPLAPEY
CRADIVDTLHREVWGQGFAPPTFSEEVQIVSQRLVGEAKNHLSLKLIHQGNPVDAIWFGH
TEQLPARVLLAFRLDVNEWKGERKVQFLVEGAQV
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atgaaaataatagcaagggacattccaccccgcgccgcctgggcgctggagcaggccggc
gtgcacccgctgctggcacgcctgtacgccgcgcgcggtgtgcaggccaaggacgagctg
gacgatggcctgggccgcctgctgccgcccagtggcgaccagggcttgaagggcattgac
gcggccgcccgcctgctggccgatgccatggcgcagaaccaacggctcatcatcgtggcc
gactacgactgcgacggcgccaccgcctgcgccgtgggcgtgcgcggcctgcggctgctg
ggcgcccaaaatgtggactacctggtgcccgaccgcgtgaccgacggctatggcctgacc
gcgtccatcgcccgccgagtggcggagcgcggggccgacatgctcatcaccgtggacaac
ggcatcgccagcgtggacggcgtggccgaagccaaggcgctgggcctgcaggtgctggtg
accgaccaccacctgcccggccccgaactgcccgctgccgacgccatcgtcaaccccaac
cagcccggctgcccgttcgagagcaagtccatggccggtgtgggcgtgatgttttatgtg
ctgctggcgctgcgcgctgaactgcgtgcgcgtggcgtgtttgacgccgccacccagccc
aagctcgaccccttgctcaccctggtggcgctgggcacagtggccgacgtggtcaagctc
gacgccaacaaccgccgcctggtcgcccagggcctcaagcgcatccgcgcggggcagatg
cccgcaggcatcgccgcactgttccatgccgccggccgcaaggcgccagtggccaccacc
ttcgactttggctttgccctgggcccacgcatcaacgctgcgggccgcctggcggacatg
acgctgggcatcgaatgcctgctgaccgacgacgcgggccgcgcagctgaactggccgcc
acgctggacggtatcaaccgcgagcgccgcgacatcgaaagcggcatgcgcgagcaggcc
atgctgatggccgagagcctgtttgacgagagcgaggagcccccgccggccatcagcgtg
ttcgaccccgactttcacgaaggcgtggtcggcatcgtggccagccgcatcaaggacaag
ctgcaccgccccaccttcgtgtttgcagccagcagcgcgccgggcaaggagcacgagctc
aaaggctcgggccgctccatccccggctttcacctgcgcgacgcactcgacctggtgtcc
aagcgccacccgggcgtgatcctgaagtttggcggccacgccatggcggcgggctgcacc
gtggccgaggtatcgttcgacgtgttcgagcaggcttttgcccaggtggcgcaggaatgg
ctggacgccgccaccctcacccgccgcatcgagaccgacggcccgctggcccctgaatac
tgccgcgccgacatcgtcgacaccctgcaccgcgaggtctggggccagggctttgcgccg
cccaccttcagcgaagaggtgcagatcgtgagccagcgcctggtgggcgaggccaagaac
cacctgtcgctcaagctcatccaccagggcaaccccgtggacgccatctggttcggtcac
accgagcagctgcccgcccgggtgctgctggccttccgcctggatgtgaacgagtggaag
ggcgagcgcaaggtgcagtttttggtcgaaggtgcgcaggtctag
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