Acidovorax sp. KKS102: C380_07140
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Entry
C380_07140 CDS
T02290
Name
(GenBank) ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ack
Acidovorax sp. KKS102
Pathway
ack03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ack00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C380_07140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ack03019
]
C380_07140
03009 Ribosome biogenesis [BR:
ack03009
]
C380_07140
Enzymes [BR:
ack01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
C380_07140
Messenger RNA biogenesis [BR:
ack03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C380_07140
Ribosome biogenesis [BR:
ack03009
]
Prokaryotic type
rRNA processing factors
C380_07140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
zf-C2HC_3
Motif
Other DBs
NCBI-ProteinID:
AFU45137
LinkDB
All DBs
Position
complement(1563697..1566792)
Genome browser
AA seq
1031 aa
AA seq
DB search
MKRMLINATQPEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDY
GEDRHGFLPFKEISRQYFAPGVSPSQARINEVIKEGQELLVQVEKEERGNKGAALTTFIS
LAGRYVVLMPNNPRGGGVSRRIEGEDRAELKEAMDQLEYPNGMSIIARTAGIGRTAPELQ
WDLNYLLKLWNAIDGAAKGGKGAFLIYQESSLVIRAIRDYFNNDIGDILIDTDDIYEQAQ
QFMAHVMPEHAARVKRYRDDAALFSRFQIEHQIESAYARTVSLPSGGAIVIDHTEALVSV
DVNSARAIKGGDIEETATRTNLEAADEVARQMRLRDLGGLIVIDFIDMEESKNRREVENR
LRDALRQDRARVQFGTISKFGLMEMSRQRLKPALSEGSSIPCPRCGGSGHIRDTESSALQ
ILRIIQEESMKDNTAAVHCQVPVEVASFLLNEKRTEIAKIELKQRVAVLMVPNKTLETPN
YRLERLKHDDPRLDHIEASYKLAEEVEDPTSVTRRSQEPTNKQTPVIKGVLPDAPAPVAE
PRPEGAARPPRGGQRPAAHAAPAPAPVAAPAPVAPAPQEQGFFAWLKSLFGFGSAPAAPA
PVATAAPAATPAAAETTGRGEPRREGRNGESRGRRGGRDGNRDGQREGAPRDGNREGSNG
ESRGRRGERPAEGRAPRDAERRPEGEGRDGGRNGRGEGREGGRGRRDSEPRNLNAGTNGD
NANAATAQVEGPNAGNTGGAEGQPAQQPRGERGPRRERGDRGGNRGERGERAPRAVEAQE
AAAPAAAGDFADTAPLASLPDLDLSGNDAPANGNGNGNGNGNGASEEQRRERRSRDRYGR
DRRERGERGPRDANGNAEAAAPAMLDFDPTQAEPAPAQDEAPRRSYFSNNTPAAEPVAPV
AAAPVAAATEPIAVPAPAAPVAATAPVAAPAPAAAAPAPAAPAKGLPRVQAFTLPIDELQ
QVAAASGLQWVNSDADKIAAVQAAIAAEPKPIRVPRERPPAVVLDEGPLVLVETRRDLSA
MALPFEQPPAA
NT seq
3096 nt
NT seq
+upstream
nt +downstream
nt
atgaagcggatgctcatcaacgccacgcagcccgaagaacggcgcctggccatcgtcgac
ggacaaaagctcctcgactacgaaatcgaaattgaagggcgcgagcagcgcaagggcaac
atctacaaggccgtcgtcacgcgcgtcgagccctcgctggaagcctgctttgtcgattac
ggcgaagaccgccacggcttcctgccgttcaaggaaatctcgcgccagtacttcgccccc
ggcgtgtcgcccagccaagcgcgcatcaacgaagtcatcaaggaaggccaggaactgctg
gtccaggtagaaaaggaagagcgcggcaacaagggtgcagccctgaccaccttcatctcg
ctggcaggccgctacgtggtgctgatgcccaacaacccccgtggcggtggcgtgtcgcgc
cgcatcgagggcgaggaccgcgccgaactcaaggaggcgatggaccaactggagtacccc
aacggcatgtccatcattgcgcgcaccgctggcatcggccgcaccgcgcccgaactgcag
tgggacctgaactacctgctgaaattgtggaacgccatcgacggcgctgccaagggcggc
aagggcgccttcctgatctaccaggaatcgagcctggtgatccgcgccatccgcgactac
ttcaacaacgacatcggtgacatcctcatcgataccgacgacatctacgaacaggcgcag
cagttcatggcgcacgtcatgcccgagcatgccgcccgcgtgaagcgctaccgcgacgac
gccgccctgttcagccgcttccagatcgagcaccagatcgagtcggcctacgcccgcacc
gtgagcctgccctcgggcggcgccatcgtgatcgaccacacggaagcgctggtgtccgtg
gacgtgaactcggcccgcgccatcaagggcggcgacatcgaggaaactgccacccgcacc
aatctggaagccgccgacgaagtggcccgccagatgcgcctgcgcgacctgggcggcctt
atcgtgatcgacttcatcgacatggaggagtcgaagaaccgccgcgaagtggaaaaccgc
ctgcgcgatgcgctgcgccaggaccgcgcccgcgtgcagttcggcaccatcagcaagttc
ggcctcatggaaatgagccgccagcgcctgaagcccgcgctgtccgaaggctcgtccatc
ccctgcccccgctgcggcggctcgggccatatccgcgacaccgaatcgtcggcgctgcag
atcctgcgcatcattcaagaagaatcgatgaaggacaacaccgccgccgtgcactgccag
gtgccggtggaagtggcctcgttcctgctgaacgaaaagcgcaccgagatcgccaagatc
gaactcaagcagcgcgtggccgtgctgatggtgcccaacaagacgctggaaacccccaac
taccgcctggaacgcctcaagcacgatgacccgcgcctggaccacatcgaagccagctac
aaactcgccgaagaagtggaagatccgacgtctgtcacacgccgctcgcaggagcccacc
aacaagcagaccccggtgatcaagggcgtgctgcctgacgcacccgcccccgtggccgaa
ccccgccccgaaggcgcggcgcgcccaccccgtggcggccagcgccccgcagcccatgca
gcccctgcacctgcccccgtggccgctccggcgccagtcgcccccgcgccgcaggaacaa
ggcttcttcgcctggctcaagagcctgttcggctttggcagcgcccccgcagcccccgcc
ccggtggcaacggctgcgccagccgccacaccggccgcggctgaaaccaccggccgtggc
gaaccccgccgcgaaggccgcaatggcgaaagccgtggccgccgtggaggtcgtgatggc
aaccgcgacggtcagcgcgaaggcgcaccgcgtgacggcaatcgcgaaggcagcaacggc
gaaagccgtggccgccgtggtgaacgcccggccgaaggccgcgcaccccgcgacgcagag
cgccgccccgagggcgaaggccgtgacggtggccgcaacggacgcggcgaaggccgtgaa
gggggccgtggccgccgcgacagcgagccacgcaacctgaacgctggcacgaacggtgac
aacgccaacgccgcaaccgctcaggtggaaggccccaacgctggcaacaccggtggtgca
gaaggccaacccgcccagcaaccccgtggcgaacgcggcccgcgccgcgaacgcggtgat
cgcggtggcaaccgtggcgagcgtggtgaacgcgctccccgtgcggtcgaggcccaggag
gcagcagccccagccgctgctggcgactttgccgataccgcgcccctggcctcgctgcca
gacctggacctgagtggcaatgacgcacccgcgaatggcaatggcaatggcaatggcaat
ggcaatggcgccagcgaagagcaacgccgcgagcgccgctcccgcgaccgctacggccgt
gaccgccgcgaacgtggcgagcgtggcccacgcgacgccaacggcaacgctgaagccgca
gcacccgccatgctggacttcgaccccacccaggcagagcctgccccggcacaggacgaa
gcgccacgccgcagctacttcagcaacaacacgcccgccgcagagcctgtggcaccggtg
gccgcagcgccagtcgcagcggctactgaacctatagctgttccagcgcctgccgccccc
gtggccgccacggctccggtagcggcacccgctccggcagctgcagcaccagcgcctgca
gcgcctgccaagggcctgccccgcgtccaagcgttcacgctgcccatcgatgaactgcag
caagtcgctgctgcatcgggcctgcagtgggtgaactctgacgcggacaagattgcggcg
gtgcaggccgccatcgctgccgagcccaagcccatccgcgtgccccgcgagcgcccccca
gcggtggtgctggacgaaggcccgctggtgctggtggaaacccgccgcgacctgtcggcc
atggcgctgccgtttgagcagccccccgcagcctga
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