Acidovorax sp. KKS102: C380_09325
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Entry
C380_09325 CDS
T02290
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
ack
Acidovorax sp. KKS102
Pathway
ack03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ack00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C380_09325 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ack03021
]
C380_09325 (rho)
03019 Messenger RNA biogenesis [BR:
ack03019
]
C380_09325 (rho)
Transcription machinery [BR:
ack03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
C380_09325 (rho)
Messenger RNA biogenesis [BR:
ack03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
C380_09325 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA_25
Spore_III_AA
S1CSD-TOTE-2
AAA
ResIII
Motif
Other DBs
NCBI-ProteinID:
AFU45567
LinkDB
All DBs
Position
complement(2028782..2030044)
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AA seq
420 aa
AA seq
DB search
MHLNELKALHVSEVLKQAEELEIENTGRMRKQELMFAIIKKRAKAGEQVFADGVLEILPD
GFGFLRSPDTSFTASTDDIYISPSQVRRFNLHTGDMIEGEVRTPKDGERYFALTKLDKVN
GGPPEQNKHKVMFENLTPLFPKEQMRLERDIKGDENITGRIIDIIAPIGRGQRALIVAPP
KSGKTVMMQHIAHAITANNPDVHLMVLLVDERPEEVTEMQRTVKGDIIASTFDEPAARHV
HVAEMVIERAKRLVELKKDVVILLDSITRLARAYNNVVPSSGKVLSGGVDAAALQRPKRF
FGAARKVEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNCEIHLNRRLYEKRVFPAIEL
NKSGTRREELLLPPEILQKTRILRQFMYNMDEIESMELMIKNMKATKTNVDFFDMMRRGG
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgcacttaaacgaactcaaggcactgcacgtgtctgaagtcctgaagcaggccgaagaa
ctcgaaatcgaaaacacaggccggatgcgcaaacaggaattgatgtttgcgatcatcaag
aagcgcgccaaggcaggcgagcaggtatttgctgacggggtgctggaaatcctgcccgac
ggattcggctttttgcgcagccccgacaccagcttcaccgccagcacggacgacatctac
atcagccccagccaggtgcgccgtttcaacctgcacaccggcgacatgatcgaaggtgaa
gtgcgcacgcccaaggacggcgagcgctactttgccctgaccaagctggacaaggtcaac
ggcggcccacccgagcagaacaagcacaaggtgatgttcgaaaacctgacgccactgttc
cccaaagagcagatgcgcctggaacgcgacatcaagggcgacgagaacatcacaggccgc
atcatcgacatcatcgcgcccatcggccgcggccagcgcgcattgatcgtggcgccgccg
aagagcggcaagacggtgatgatgcagcacatcgcccacgccatcacggccaacaacccc
gacgtgcacctgatggtgctgctggtggacgagcgccctgaagaagtgacggaaatgcag
cgcacggtgaagggcgacatcattgcatcgaccttcgacgagcccgccgcccgccacgtg
catgtggccgaaatggtgatcgagcgcgccaagcgcctggtggagctgaagaaggacgtg
gtgatcctgctggactcgatcacccgcttggcccgcgcctacaacaacgtggtgccctcc
agcggcaaagtgctgtcgggcggtgtggacgcagcagcgctgcagcgccccaagcgcttc
ttcggcgcagcccgcaaggtggaagaaggcggctcgctcaccatcatcgccaccgcgctg
gtcgataccggcagccgcatggacgaagtgatctttgaagaattcaagggcacgggcaac
tgcgaaatccacttgaaccgccgcctgtacgaaaagcgcgtgttccccgccattgaactc
aacaagagcggcacgcgccgcgaagagctgctgctgcccccggaaatcctgcagaagacc
cgcatcctgcgccagttcatgtacaacatggacgagatcgagtcgatggagctcatgatc
aagaacatgaaggccaccaagaccaatgtggacttcttcgacatgatgcgtcgcgggggc
tga
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