Acidovorax sp. KKS102: C380_15055
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Entry
C380_15055 CDS
T02290
Name
(GenBank) DEAD/DEAH box helicase domain-containing protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ack
Acidovorax sp. KKS102
Pathway
ack03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ack00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C380_15055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ack03019
]
C380_15055
Enzymes [BR:
ack01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C380_15055
Messenger RNA biogenesis [BR:
ack03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C380_15055
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
UvrD-helicase
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
AFU46708
UniProt:
K0HUS1
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All DBs
Position
3296815..3298599
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AA seq
594 aa
AA seq
DB search
MTFDELNLAPAILKAVHETGYETPTPIQAQAIPAVLEGHDLLAGAQTGTGKTAAFTLPML
HRLSQGTAPKNKFGGKGIRALVLTPTRELAAQVEESVREYGKYLDINSTVVFGGVGMNPQ
IDRIKRGVDILVATPGRLLDLQQQGFLDLSTVEVLVLDEADRMLDMGFIHDVKKVLALVP
NDKQSLLFSATFSDEIRELANTLLKNPQSIQVTPRNTTVQRISQVIHPVGRGKKKQVLLH
IIQQHNWSQVLVFTRTKFGANNVAEFLTKNGVQAMALHGNKSQSARTQALAGFKSGEIRA
LVATDIAARGIDIDDLPHVVNYEIPNVPEDYVHRIGRTGRAGATGEAVSLVCMDEEGFMM
DIERFTKQQIPVQVIEGFGPEPGEKAEPIAMGRQTIWGGAGKPPSRDVMQAAAKAARTEM
MERIRTNKASQGGGQGGGERGPRAGNGGGGRSGGGAPRNAQGPAGGGRGGQGGGRGGPRD
GASQAPARSRGPRPEGGGGHRYDDAQPPRANAHLGTHLGHSNPGHRSSGHGAGGQPDPMR
TSVDSMAERGRRGGGGGYRNSGGGGYGGGSGAGGGGGRGNGPRGPGGPRGSFNR
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
atgacatttgacgaactgaacctggctcctgccatcctgaaggccgtgcacgaaacgggc
tatgaaacccccacgcccattcaggcccaggccattcccgctgttctggaaggccacgac
cttctggccggcgcgcagactggcaccggcaagaccgccgcgttcaccctgcccatgctg
caccgcctctcgcaaggcacggcacccaagaacaagtttggtggcaagggcatccgcgcc
ctggtgctaacccccacccgcgaactcgccgcccaggtcgaagaatctgtgcgcgaatac
ggaaagtacctggacatcaattccacggtggtctttggcggcgtgggcatgaacccacaa
atcgaccgtatcaagcgtggcgtggacatcctggtggccacccccggccgcctgctggac
ctgcagcaacagggcttcctggacctgtccacggtagaagtgctggtgctggacgaagcc
gaccgcatgctggacatgggtttcatccacgacgtgaagaaggtgctggccctggtgccc
aatgacaagcaaagtctgctgttctcggccactttcagcgatgagatccgcgagctggcc
aacaccctgctcaagaacccccagagcattcaggtcaccccgcgcaacaccacggtgcaa
cgcatctcgcaggtgatccaccccgtgggccgcggcaagaaaaagcaggtgctgctgcac
atcatccagcagcacaactggagccaggtgctcgtgttcacgcgcaccaagttcggcgcc
aacaacgtggccgagttcctgaccaagaacggtgtgcaggccatggcactgcacggcaac
aagagccagagcgcccgtacgcaggccttggcaggcttcaagagcggcgagatccgcgcc
ctggtggccaccgatatcgctgcgcgcggcatcgacattgatgacctgccgcacgtcgtc
aactacgaaatccccaacgtccctgaagactacgtgcaccgcattggccgcacgggccgt
gctggcgctaccggcgaggccgtgagcctggtctgcatggacgaagaaggcttcatgatg
gacatcgagcgcttcaccaagcagcagatccccgtgcaagtcatcgaaggctttggcccc
gagcctggtgaaaaggccgagcccatcgccatgggccgccagaccatctggggcggcgca
ggcaagcccccgagccgcgacgtgatgcaggcggccgccaaggccgcccgcaccgaaatg
atggaacgcatccgcaccaacaaggccagccaaggcggcggccagggtggcggtgagcgc
ggcccccgcgccggcaatggcggcggtggccgctccggcggcggcgcgccccgcaacgcc
cagggcccggccggtggcggccgtggcggacaaggtggtggtcgcggcggcccgcgcgac
ggcgcatcccaggcaccagcacgcagccggggcccacgcccagagggcggtggcggccat
cgctacgatgacgcacaacccccccgcgccaatgcgcacctgggcacccacctgggtcac
agcaatccaggccatcgcagctcgggccatggtgcgggcggtcagcccgaccccatgcgc
accagcgtggacagcatggctgaacgcggtcgccgtggtggtggcggtgggtatcgcaac
tctggaggtggtggctatggcggcggatcaggcgcgggtggcggtggtggccggggcaac
gggcctcgtgggccaggcggtcctcgcggctcttttaaccgctga
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