Acidovorax sp. KKS102: C380_15230
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Entry
C380_15230 CDS
T02290
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ack
Acidovorax sp. KKS102
Pathway
ack03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ack00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C380_15230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ack03400
]
C380_15230
Enzymes [BR:
ack01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C380_15230
DNA repair and recombination proteins [BR:
ack03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
C380_15230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
ERCC3_RAD25_C
Glyco_tran_WecG
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AFU46743
UniProt:
K0HUU0
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All DBs
Position
3336177..3339641
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AA seq
1154 aa
AA seq
DB search
MELPKLSPGKRFALPRPVGSADSLLLARLAERDKASGHTTAIVTADATDAQRLIDEMAFF
APGLRCALFPDWETLPYDTFSPHQDLISERLATLWRISQGEADVVLVPATTALYRLAPPS
FLAGYTFHFKVKQKLDEAKFKAQLTLAGYSHVSQVVSPGEYAVRGGLIDLFPMGSLVPFR
VDLFDDEIDSIRTFDPDSQRSLYPVPEVRLLPGREFPMDDDARAKFRSRWREMLEGDPTK
SRIYKDMGAGVATAGIEYYLPLFFDDTATVFDYLGGEATVVLHGDLEPAFQRFWQDTKDR
FRLVQGDPERPVLPPEALFLSADQFYTRAKEHAQLSIRPGVEDVDDNPHFQKLGDLSVVR
GAEDPLARLHAHIRNTQHRVLLLAESDGRRESLLDFLRASGVNPPAFDSLAEFQGTADEK
VGIATAGLTVGFSWIEDGIDFVTETELFAAGPTTRRRKKQEQVSDVEALIKDLAELTLGD
PVVHSQHGIGRYRGLINMDVGNKNPDGTPAMQEFLHLEYADKAVLYVPVSQLQLISRYTG
VSADEAPLHKLGSGQWEKAKRKAAEQVRDSAAELLNIYARRAAREGHAFRYSPQDYETFA
NDFGFEETADQNAAIHAVIQDMISPRPMDRLVCGDVGFGKTEVALRAAFVAVTGGKQVAF
LAPTTLLAEQHYQTLVDRFSKWPVKVAEVSRFRSGKEITAAIKGIGDGTVDIVVGTHKLL
SESTKFHNLGLLIIDEEHRFGVRHKEQMKALRAEVDVLTLTATPIPRTLGMALEGLRDLS
VIATAPQRRLAIKTFVRNEGTGVIREAVLRELKRGGQVYFLHNEVETIENRRQKLEEILP
EARIAVAHGQMPERELERVMRDFVAQRFNILLCSTIIETGIDVPTANTIIMSRADKFGLA
QLHQLRGRVGRSHHQAYAYLMVPDTEGLTKQAAQRLDAIQQMEELGSGFYLAMHDLEIRG
AGEVLGENQSGNMLEVGFQLYNEMLNEAVKALKAGKEPDLLSPLSVTTDINLHAPALLPD
DYCGDVHLRLSFYKKLATAKTPDQIDGLLEEIVDRFGKLPPQAQTLIDVHRLRVLSQPYG
VVKVDAAPGVINITFKPQPPIDPMRIIELIQKNKHIKLAGNEKLRIERELKEPKDRAQMV
RDILRSLGQPVVAA
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atggaactccccaaactctcccccggaaaacgctttgccctgccccgccccgtgggcagt
gccgactccctgctgctagcccgcttagccgagcgcgacaaggcctctggccacaccacc
gccatcgtcacggccgacgccaccgacgcgcagcggctcatcgacgagatggcctttttt
gcgcccggcctgcgctgcgcactgttccccgactgggagacgctgccttacgacaccttc
tccccgcaccaggacctgatcagcgagcgactggccacgctgtggcgcatttcgcagggc
gaagccgatgtcgtgctggtgcccgccaccaccgcgctgtaccggctcgctccgccctcc
ttcctcgcgggctacaccttccatttcaaagtcaaacaaaagctcgacgaggccaagttc
aaggcccagctcacgctggcgggctacagccatgtctcgcaggtggtgagcccgggcgag
tacgccgtgcgcggcgggctgatcgacctgttccccatgggctcgctggtgcccttccgc
gtggacctgttcgacgacgagatcgacagcatccgcaccttcgaccccgacagccagcgc
agcctgtaccccgtgcccgaggtgcgcctgctgcccggccgcgaattccccatggacgac
gacgcgcgggccaagttcagaagccgctggcgcgaaatgctggagggcgacccgaccaag
agccgcatctacaaggacatgggcgcgggcgtcgccacggcgggcatcgagtactacctg
ccgctgttctttgacgatacggccaccgtgttcgactacctgggtggtgaagccaccgtg
gtgctgcacggcgacctggaaccggccttccagcgcttctggcaggacaccaaggaccgc
ttccgcctggtgcagggtgaccccgagcgcccggtactgccgcccgaggcgctgttcctg
tcggccgaccagttctacacccgcgccaaggagcatgcccagctgtccatccgccccggt
gtggaggatgtggatgacaacccgcacttccagaagctgggcgacctgtcggtggtgcgc
ggcgccgaggacccactagcacgcctgcatgcccacatccgcaacacgcagcaccgcgtg
ctgctgctggccgagagcgatggccggcgcgagagcctgctcgactttctgcgtgccagc
ggggtgaaccctccggccttcgactcgctggccgagttccagggcaccgccgacgaaaag
gtgggcatcgccaccgccgggctcaccgtgggctttagctggatcgaagacggcatcgac
ttcgtcaccgagaccgagctgtttgccgcaggccccaccacgcgccgccgcaagaagcaa
gagcaggtcagcgatgtcgaggcgctgatcaaagacctggccgagctaacgcttggcgac
ccggtggtgcacagccagcatggcattggccgctaccggggcctgatcaacatggacgtg
ggcaacaagaaccccgatggcacgcccgccatgcaggagtttttgcacctggaatacgcc
gacaaggccgtgctctacgtcccggtgagccagctgcagctcatcagccgctacaccggc
gtcagcgccgacgaggcgccgctgcacaagctgggcagcggccagtgggaaaaggccaag
cgcaaggccgccgagcaggtacgtgacagcgccgccgagctgctcaacatctacgcccgc
cgcgccgcgcgcgaaggccacgccttccgctacagcccgcaagactatgagacctttgcc
aacgacttcggcttcgaggaaacggccgaccagaacgccgccatccacgcggtgatccag
gacatgatcagcccccgccccatggaccgactggtctgcggcgacgtgggcttcggcaag
accgaggtggccctgcgcgcggccttcgtggccgtcacggggggcaagcaggtggccttc
ctcgcgcccaccacgctgctggccgagcagcactaccagaccctggtggaccgcttcagc
aagtggccggtgaaggtggccgaggtatcgcgctttcgctcgggcaaggagatcaccgcc
gccatcaagggcatcggcgacggcacggtggatattgtggtgggcacgcacaagttgctt
tccgaatccaccaagttccacaacctgggcctcttgatcatcgacgaggagcaccgcttt
ggcgtgcgccacaaggagcagatgaaggccctgcgcgccgaggtggacgtgctcaccctc
acggccacgcccatcccgcgcacgctgggcatggcgctggaaggcctgcgcgacctcagc
gtgatcgccaccgcgccgcagcggcgcctggcgatcaagacctttgtgcgcaacgagggc
acgggcgtgatccgcgaggcggtgctgcgcgaattgaagcgcggcgggcaggtctacttc
ctgcacaacgaggtggagaccatcgagaaccgccgccagaagctcgaagagatactgccc
gaggcccgcatcgccgtggcccacggccagatgcccgagcgcgagctggagcgcgtgatg
cgcgacttcgtggcccagcgcttcaacatcctgctgtgctcgaccatcatcgagaccggc
atcgacgtgcccacggccaacaccatcatcatgagccgcgccgacaagttcggcctggcg
cagctgcaccagctgcgcgggcgcgtgggccgcagccaccaccaggcgtatgcctacctg
atggtgcccgacaccgagggcctgaccaagcaggccgcgcagcggctcgacgccatccag
cagatggaggaactgggcagcggcttctacctggccatgcacgacctggagatccgcggt
gcgggcgaggtgctgggcgagaaccagagcggcaacatgctcgaagtcgggttccagctc
tacaacgagatgctcaacgaggccgtcaaggcgctcaaggcgggcaaggagcccgacctg
ctttcgcccctgtccgtcaccaccgacatcaacctgcacgcccccgccctgctgcccgac
gactactgcggcgacgtgcacctgcgcctgtcgttctacaaaaagctggccaccgccaag
acgcccgaccagatcgacggcctgctcgaagagatcgtggaccgcttcggcaagctaccg
ccgcaggcccagaccctgattgacgtgcaccgcctgcgcgtgctgagccagccctatggc
gttgtgaaggtggatgcggccccgggcgtcatcaacatcaccttcaagccccagccgccc
atcgacccaatgcgcatcatcgagctgatccagaagaacaagcacatcaagctggcgggc
aacgaaaagctgcgcatcgagcgcgagctgaaggagcccaaggaccgcgcacagatggtg
cgcgacattttgcgcagcctggggcaacccgtggtggctgcatag
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