Acholeplasma laidlawii: ACL_0432
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Entry
ACL_0432 CDS
T00659
Symbol
srmB1
Name
(GenBank) DEAD box ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
acl
Acholeplasma laidlawii
Pathway
acl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACL_0432 (srmB1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acl03019
]
ACL_0432 (srmB1)
03009 Ribosome biogenesis [BR:
acl03009
]
ACL_0432 (srmB1)
Enzymes [BR:
acl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ACL_0432 (srmB1)
Messenger RNA biogenesis [BR:
acl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ACL_0432 (srmB1)
Ribosome biogenesis [BR:
acl03009
]
Prokaryotic type
rRNA helicases
ACL_0432 (srmB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ABX81053
UniProt:
A9NFC3
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All DBs
Position
450953..452596
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AA seq
547 aa
AA seq
DB search
MAILFNDLPILDTTKVALEKLGFTEATPIQEQAIPKMILGLDLIGQAQTGTGKTFAFGIP
MVEKTDTSLRQTQGLILTPTRELTNQVYKEIIKLVKFYPELRVTTIVGGESYEKQFKELD
RKPHIIVATPGRIIDHIDRGTVDLSHITTLTLDEADEMLKMGFQDDIERILQTTPETRQT
VLFSATMPAFIKKIAKNYQKNPELIKIEAKSLTVDRITQAYFLVKEKEKQSLLERLLDFE
NPSTAIIFVNTKAGADRITESLQKAGFTADALHGDLKQSQRTYVMNRFRSKQLSILVATD
VAARGLDVDDVEIIVNYDLPQQDEIYVHRIGRTGRAGKKGKAFTFVTPLKRRMLDMLAHY
TKADIKRLEVPTADDVYKEQLKTFKHKIKTELANEYPNHLEAIKELLVDEGSKDQLLNYL
LDSMLPTKKTYETIEIIPEKASRRSQDERGNDKGRKDSRSSRDASPARGSGQYVDFTLNI
GKADGLTPPTLFKFMEKEYGIFSKNIGDIRHHKNETVFGLRKDSVRRLNAKKEVNYKGRK
VVIKTLN
NT seq
1644 nt
NT seq
+upstream
nt +downstream
nt
atggcaattttatttaacgatttaccaatattagatacaacaaaagtagcattagaaaaa
ttaggttttactgaagctacaccaatacaggaacaagcaattccaaagatgattttaggt
ttagacttaatcggtcaagctcaaacaggaacaggaaagacatttgcttttggcataccg
atggtcgaaaaaactgatacatccttaagacaaactcaaggtttaattttaactccaact
agagaattaacaaatcaagtgtacaaagagattattaaattagtgaagttttacccagaa
ttaagagttacaaccatcgttggtggtgagtcctatgaaaaacaattcaaggaactagac
agaaaaccacatatcattgttgcaacaccaggacgtattattgatcatatcgatcgaggt
acagtggatttatcacacattacaacacttacattagatgaagctgatgaaatgttaaaa
atgggtttccaagatgatatcgaacgcattctacaaacaacaccagaaacacgtcaaact
gtattattttctgcaacaatgccagcatttattaaaaagatagctaaaaactatcaaaaa
aatcctgagcttattaaaattgaagcaaaaagtttaacagttgatcgtattactcaagct
tacttcttagttaaagaaaaagaaaaacaaagtttattagaacgtctattagattttgaa
aatccatcaactgcaattatttttgtgaatacaaaagcaggtgcggatagaattactgaa
agtttacaaaaagcaggatttactgcggatgcacttcatggtgacttaaaacaatcacaa
cgtacatacgttatgaatcgttttagaagtaaacaactatctatcttagtagcaacagac
gttgcagctagagggttagacgttgatgatgttgaaattattgtaaactatgatttacct
caacaagatgaaatctatgttcaccgtattggccgtacaggtcgtgctggtaaaaaaggt
aaagcattcacatttgttacaccacttaaacgtcgtatgttagatatgttagctcactac
actaaagcagatattaaacgcttagaagtgccaacagctgatgatgtttacaaagaacaa
cttaaaacatttaaacataaaattaaaactgaactagcaaatgaatatccaaaccattta
gaagctattaaagaattattagtggatgaaggttctaaggatcaactattaaattactta
ctagacagcatgctgcctactaaaaaaacttacgaaacaattgaaatcattcctgaaaaa
gcatcaagaagaagtcaagatgaaagaggaaatgacaaaggtagaaaagattcaagatca
tcaagagatgcttcaccagctcgtggcagtggccaatatgttgacttcactctaaatatc
ggtaaagcagatggactaacacctccgacactatttaaattcatggaaaaagaatatggt
atcttctctaaaaatattggcgatattagacaccataaaaacgaaacagttttcggactt
agaaaagattctgtaagacgtcttaatgcaaaaaaagaagtgaattataaaggtagaaaa
gtagttatcaaaacattaaactaa
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