Algirhabdus cladophorae: ACIRQ6_05270
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Entry
ACIRQ6_05270 CDS
T10905
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
acld Algirhabdus cladophorae
Pathway
acld03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acld00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACIRQ6_05270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acld03019
]
ACIRQ6_05270
Messenger RNA biogenesis [BR:
acld03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ACIRQ6_05270
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
XKD83525
LinkDB
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Position
1081947..1083614
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AA seq
555 aa
AA seq
DB search
MSTSRLMYLPLGGAGEIGMNCYVYGYGPADKERLIVVDLGVAFPDMDSTPGVDLILPDVA
WLEARKAQIEAIFITHAHEDHVGAVGHLFERLGAPIYARAFTANIARRKLDEYGVPEGAV
TTLSPYPETVEVGPFTVGFVPISHSIPESSGLVIDTPEGRVLHTGDFKIDTNPIVGEAFD
ADLWASLAKDGVRALVCDSTNVFSKAEGRSESTVGPEIETMMREASGMVVATTFASNIAR
LQTLASAAKRAGRSVCLLGRSMRRMVEAATDVGILGDFPSVVSVEDAREIPRENLMLLVT
GSQGERRAASAQLARGKYLGLSMAEGDTFLFSSKTIPGNERGVIQIMNAFSEMGVDVVYD
DEGKYHVSGHANRPDLLTMHQLTKPQILVPMHGEHRHLREHAKLGKAGGIDSIVAVNGMM
IDLSGNAPTVAEYIESGRTYLDGSVQVGAFDGIVRDRIRMALNGHVVATLILDENDDPLG
DPWCEIKGIAEMGSSDAPLVDVLEHDLGQMINRANDKTLADDDKLEEQIKRTVRQTTQAE
IGKKVEVTVVISRLA
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgagcacgagtagattaatgtacctgcccctcgggggagcgggtgaaattggaatgaat
tgttacgtgtacggctatgggcctgcggacaaagagcggctgatcgtcgtggatttgggc
gtcgcctttccggatatggacagcacgccgggggttgatttaatcctgcccgatgtggcg
tggcttgaggcgcgcaaagcgcagattgaggcgatttttatcacccacgcccatgaggat
cacgtcggtgccgtgggccatttgttcgaacggctcggcgcgcctatttacgcgcgggca
tttacggccaatatcgcgcgccgcaagttggatgaatacggggtgccagagggggcagtg
acgaccctatcgccttatcccgaaacagttgaagtgggaccattcacggtcgggtttgtt
ccaatctcgcactcgatccccgaaagcagtggtttggtcatcgacacgcccgagggccgc
gtgttgcacactggtgatttcaaaatcgacaccaatcccatcgtgggcgaagcctttgat
gcagatctttgggccagcttggccaaggacggtgtgcgcgccttggtctgcgacagcacc
aatgtgttttccaaggccgaagggcgctcggaatccactgttggacccgaaatcgagact
atgatgcgcgaagcctcgggcatggtcgtggccacgacttttgcctccaatattgcgcgg
ttgcagaccttggccagtgcagccaagcgggcgggacggtcggtttgcctgttgggccgt
tccatgcgccgcatggtcgaagccgccaccgacgtgggcatcttgggtgatttcccatct
gtggtcagcgttgaggatgcccgtgaaattccacgcgaaaacctgatgctgttggtcact
gggtcccaaggggaacgccgtgctgccagcgcccaattggcgcgaggcaaataccttggc
ctcagcatggctgagggcgacacgttcctgttttcctccaaaaccatcccaggtaacgag
cgtggcgtgatccagatcatgaatgcgttttctgaaatgggcgttgatgtggtttatgat
gacgagggcaaataccacgtttcgggccatgcgaaccggcccgatttgctgacgatgcat
cagttgaccaagccgcaaattctggtcccaatgcacggcgaacatcgccatttgcgagag
cacgccaagcttggcaaagctggtggcatcgacagcattgtcgcagtgaacgggatgatg
atcgacctgagtggcaacgcgccgactgtcgccgagtacatcgagtccggtcgcacttat
ctggatggatcagtgcaggttggtgcctttgatggaatcgtgcgcgacaggatccgtatg
gccctgaacggtcatgtggtggcgacgctgatccttgatgaaaacgacgatccactgggc
gatccatggtgcgagatcaaagggattgccgaaatgggcagttctgacgcgccgttggtc
gatgttttggagcatgatttggggcagatgatcaatcgggccaatgacaaaacgctggcc
gatgatgataagcttgaagaacagatcaaacgcactgtgcgtcaaaccacccaagccgag
atcggcaagaaggtggaagtgactgtggtgatcagccgcttggcttag
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