Algirhabdus cladophorae: ACIRQ6_07995
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Entry
ACIRQ6_07995 CDS
T10905
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
acld Algirhabdus cladophorae
Pathway
acld03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
acld00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ACIRQ6_07995 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
acld03400
]
ACIRQ6_07995 (mfd)
Enzymes [BR:
acld01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ACIRQ6_07995 (mfd)
DNA repair and recombination proteins [BR:
acld03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ACIRQ6_07995 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
MFD_D3
AAA_16
Cas3-like_C_2
AAA_30
SecA_DEAD
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
XKD84036
LinkDB
All DBs
Position
complement(1665295..1668768)
Genome browser
AA seq
1157 aa
AA seq
DB search
MSQDSFPHITISGAPEGFDAKLVLAELAKGSGPVCHIVRDDKRLEAMRAALEIYAPDVPV
MVFPAWDCLPYDRISPNADVSAARMAVLAGLAQDSLEGFVLLTTLNAATQRVPARSLMKS
AAFTARVGDRIDEQALREFLVRMGFTQSPTVMEAGDYAVRGGIIDIFPPGEAGPVRLDLF
GDVLDGARRFDPATQRTTQKLTSVELAPVSEVILDEASITRFRQNYRIEFGAAGTDDPLY
EAVSAGRKHAGVEHWLPFFHETLETLFDYLPKATITLDDQFDPSRVSRWESLADQYETRQ
EALKQKGRMDSVYKPCPPQLLYLDDAAWADAIKGHRVCRFATLPQATGVGVLDAGGRIGR
NFSPERQQEHISLFKALADHIHNRLSEGPVVVASYSEGARERLAGLIEDEGVLAATPIRD
MRDVGKTGVHLAVWPLEHGFVAPGLTVISEQDVLGDRLIRAPRKKKRAENFLTETQSLSP
GDLVVHVDHGVGRYKGMEVITAAGAAHECIFLEYAEAAKLYLPVENIELLSKFGHDEGLL
DRLGGGAWQAKKAKLKERIREIADRLIRVAAERALRTAPIMEPPDGMWDAFSARFPYQET
DDQLNAIGDVLDDMASGQPMDRLICGDVGFGKTEVAMRAAFVAAMSGTQVAIIAPTTLLA
RQHYKSFADRFRGFPLEVRQLSRFVSTKDANATRDGINRGTVDIVVGTHALLAKTVRFKN
LGLLVIDEEQKFGVTHKERLKSLRTDIHVLTLTATPIPRTLQLSLSGVRELSIIGTPPVD
RLAIRTYVSEFDTVTLREALLREHYRGGQSFFVVPRITDLPEIEDFLRREVPEVSYITAN
GQMAAGDLDDRMNAFYDGKYDVLLATTIVESGLDIPTANTMVVHRADMFGLAQLYQIRGR
VGRSKTRAYAYLTTKPRAKLTPTAEKRLRVLGSLDTLGAGFTLASQDLDIRGAGNLIGEE
QSGQMREVGYELYQSMLEEAIAKIKSGSMEGLTDDDGQWAPQINLGVPVLIPETYVPDLD
VRLGLYRRLSGLTTKVELEGFAAELIDRFGTLPKEVNTLMLVVRIKAMCKKAGIAKLDGG
EKGASIQFHNDKFASPQGLVEFINDQRGLAKVKDNKIVVRRDWKKDSDKIKGAFGIARDL
AEKAIAERKRKKAAAAN
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgagccaagacagttttccccacatcaccatttctggtgcgccagaaggctttgacgcc
aagttggtactggccgaattggccaaaggctcgggccctgtgtgccatatcgtacgcgat
gacaaacgtcttgaggccatgcgcgcagccctcgaaatttatgcgccagatgtgcctgtt
atggtctttcccgcgtgggactgtctgccctatgatcgcatttcccccaatgcggatgtg
tctgcggcacggatggcggttttagccggattggcccaagacagcttggaagggttcgtg
ttgctgactacgctgaatgccgcaacccagcgtgtaccggcccgcagcctgatgaaatct
gcagcctttacagcccgtgtcggtgaccggattgacgaacaagcgttgcgcgaatttctg
gtccgcatgggctttacccaaagccccacggtgatggaggctggcgattatgccgtacgt
ggtgggatcatcgatatctttccccccggcgaggcaggccccgtgcgtctggaccttttt
ggcgacgtgttggacggcgcgcgccggtttgatcctgcgacccaacgcaccacgcaaaag
ctgacatcagtggaattagccccagtcagcgaagtgatccttgatgaggcctcgatcacc
cggtttcgacaaaactatcgcatcgaatttggtgcggcaggcactgatgatccactctat
gaggccgtgagcgcagggcgcaaacacgcaggtgttgaacactggttgccgtttttccat
gaaacgcttgagacactgtttgattacctgcctaaggccaccatcacgctggatgatcag
ttcgatcccagccgggtgtcacggtgggaaagcctcgcggatcagtatgaaacgcggcaa
gaggcgctcaagcaaaagggccggatggacagtgtctataaaccctgtccgccgcaattg
ttgtatcttgatgatgccgcatgggctgatgcgatcaagggccaccgtgtgtgccgtttt
gcaacactgccacaggccactggcgttggtgttttagatgcaggcggacggatcgggcgc
aatttttcgcccgaacgtcagcaggaacacatcagccttttcaaggccttggccgatcat
attcacaatcgcctgtccgaagggccggttgtggtggcctcctattccgaaggggcgcgc
gaacggctggctggcctgatcgaagacgaaggcgttctggccgcaactccaatccgcgac
atgcgcgacgtaggcaaaaccggggtgcatctggcggtttggccgttggaacacgggttt
gtggccccgggtctgactgtgatttctgaacaggatgttctgggggatcgcttgatccgt
gcaccacgtaagaaaaagcgggccgagaacttcttgaccgaaacccaaagcctgtcgccg
ggcgatttggtggtgcatgtggaccacggcgtgggacgctataaaggtatggaagtcatc
acagcggctggggccgcgcacgagtgtatttttctggagtacgccgaagccgccaagctt
tatttgcctgttgaaaacatcgaattgctgtccaagtttggccatgacgagggtttgctc
gaccggttgggcggcggtgcatggcaggccaaaaaggccaagctgaaggaacgcatccgc
gaaatcgcggatcgtttgatccgcgtcgctgccgaacgcgctctgcgcactgcccctata
atggagccacccgatggcatgtgggacgcgttttcagcacgcttcccctatcaggaaacc
gacgatcagttaaacgcaattggtgatgttctggacgatatggcctcaggccaacccatg
gatcggttgatctgcggcgacgtgggctttggtaaaaccgaagtggccatgcgcgcggcc
tttgtggcggccatgtcgggcacccaagtggcgatcattgcacccaccacattgctggcc
cgtcaacactacaaaagctttgcggaccggtttcgcggctttccattggaagtccggcag
ttgtcgcgttttgtctcgaccaaagacgccaatgccacccgcgacgggatcaatcgcggc
acggttgatatcgtagtgggcacgcacgcgttgctggccaaaacggtacggttcaagaac
cttggactgctggtgatcgacgaggaacaaaagtttggggtgacccacaaggagcgactg
aaatccctgcgtaccgatatccatgtgctgaccctgacggccacgccgatcccgcgcaca
cttcaattgtcgttgtcgggggtgcgcgagcttagcattattggtacgcccccggtggat
cgcttggccattcgcacctatgtctcggaatttgacacggtgaccttgcgtgaagcgctg
ctgcgcgaacattatcgtggcggccagagtttctttgtggtgccacgcatcactgacctg
cccgagatcgaggatttcttgcggcgtgaagtgcctgaggtcagctatatcaccgccaat
ggtcaaatggcggcaggcgatttggacgaccggatgaacgccttttacgacggcaaatac
gatgtgcttctggccacaacgattgtcgaatccgggctggatatccccacggcgaacacg
atggtggtgcaccgcgcggatatgtttggtctggcgcaactgtatcagatcaggggtcgt
gttggccgttcaaaaacccgggcttatgcctatttgaccaccaagccgcgggccaagctg
acgccaacagccgaaaaacgtctgcgcgttttgggcagtttggacaccttgggggcaggg
ttcacgctggcgtcacaggatctggacattcgcggtgcgggcaacttgatcggtgaagaa
caatccggccagatgcgcgaagtagggtacgagctgtaccaatccatgcttgaagaggcg
attgccaaaatcaaatcaggcagcatggaaggcctcactgatgatgatggccaatgggcc
ccgcaaattaaccttggtgtaccagttttgatcccggaaacctatgtgccggatttggat
gtgcgtttgggattatatcgcaggctcagtggcttgacgaccaaagttgaactagaaggt
ttcgccgctgaactgattgatcgctttggtacgctgcccaaggaagtgaatacgttgatg
ttggtcgtgcggatcaaagccatgtgcaaaaaggcaggtattgccaagcttgatggcggc
gaaaagggtgcgtcgatccagtttcataatgacaaatttgcctcaccccaaggtttggtt
gagtttatcaatgatcaacgcggcttggccaaggtcaaagacaacaaaatcgttgtgcgg
cgcgattggaagaaagacagtgacaagataaaaggcgcctttgggattgcgcgtgatctg
gccgaaaaggcgattgccgaacgcaaacgcaagaaagccgctgcagcaaattag
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