KEGG   Arcobacter cloacae: ACLO_0039
Entry
ACLO_0039         CDS       T06845                                 
Name
(GenBank) DEAD-box ATP-dependent RNA helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
aclo  Arcobacter cloacae
Pathway
aclo03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:aclo00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    ACLO_0039
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:aclo03019]
    ACLO_0039
   03009 Ribosome biogenesis [BR:aclo03009]
    ACLO_0039
Enzymes [BR:aclo01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     ACLO_0039
Messenger RNA biogenesis [BR:aclo03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     ACLO_0039
Ribosome biogenesis [BR:aclo03009]
 Prokaryotic type
  rRNA helicases
   ACLO_0039
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_30 Cas3-like_C_2 Ribosomal_L12_N
Other DBs
NCBI-ProteinID: QKF88588
LinkDB
Position
39712..41319
AA seq 535 aa
MTFNEFNFKEQLQRAIDDAGFKEPSPIQEQAIPFILAGKDIVGQAHTGTGKTAAFGLPIL
NKLKGKSGVEAVVIVPTRELAMQVSDEIYRFGKLLGINTATVYGGQAYARQIKLIENASV
IIATPGRFLDLLRGEKIDIKPDFVILDEADEMLDMGFLDDIKEIFTFLPKERQTLLFSAT
MPTAIKNLAKTILNEPEFVTLTKSDVTNSKITQTFYVVDERERDDALIRLYDYKNPTKSI
IFCRTKKEVDRLSTFMVSQGFMAKGLHGDMEQRQREEAIRAFKTSKLEILIATDVAARGL
DVNDVSHVFNYHLPFDSESYVHRIGRTGRAGKEGVAVSIVTPHEFRMLQKIEKNIGTKLE
AKIVPNIDSVKVKKIAELKQQISEQEIKDYALALVEELKEEFDISTIAFKLASMISASTY
VQGNNNIGKSESDIKRLIENSSRYEGEGSSGRNSRGGGRFGSRGGSRGSDSRGGRSSGDR
NSRGGDRDRAPRGDRPRGDRPRGDRPASDRPRSDRPRTDKPKTDRPSGDRSRKRD
NT seq 1608 nt   +upstreamnt  +downstreamnt
atgacatttaatgaattcaatttcaaagaacaattacaaagagcaattgacgatgcaggt
tttaaagagccaagtcctattcaagaacaagctattccatttatattagcaggtaaagat
attgttggtcaagcacatacaggtacaggtaaaacagcagcatttggacttcctatttta
aataaattaaaaggaaaatcaggcgttgaagctgttgttatagttccaacaagagagctt
gcaatgcaagtttctgatgaaatttatagatttggaaaacttttaggaattaacacagct
acagtttatggtgggcaagcttatgctagacaaattaaattaattgaaaatgctagtgtt
attatagcaactccaggaagattccttgatttattaagaggtgaaaaaattgatataaaa
cctgattttgttattcttgatgaagctgatgaaatgcttgatatgggatttttagatgat
attaaagagatttttactttcttaccaaaagagagacaaactctattattctctgcgact
atgccaacagctattaaaaatcttgcaaaaactattttaaatgagccagagtttgtaact
ttaacaaaaagtgacgtaacaaattcaaaaatcactcaaactttttatgttgttgatgaa
agagaaagagatgatgcactaattagattgtatgactataaaaacccaacaaaatctata
attttctgtagaactaaaaaagaagttgatagattatcaacatttatggtttctcaagga
tttatggcaaaaggtcttcatggtgatatggagcaaagacaaagagaagaggctattaga
gcatttaaaacttcaaaattagagattttaattgcaacagatgttgcagcacgtggactt
gacgtaaatgatgtgtctcatgtatttaattaccatttaccatttgattctgaatcttat
gttcatagaattggaagaacaggacgtgctggtaaagaaggagtagctgtatctattgta
actcctcatgaatttagaatgttacaaaaaattgaaaaaaatataggaactaaattagaa
gctaaaattgttccaaatattgattctgtaaaagttaaaaaaattgcagaattaaaacaa
caaattagtgaacaagagataaaagattatgctttagcattagttgaagagttaaaagaa
gagtttgatatttcaactattgcatttaaattagcttcaatgatttctgcatctacatat
gttcaaggaaacaataatattggtaaatctgaatctgatattaaaagattaattgaaaat
tcatcaagatatgagggtgaaggttcatcaggaagaaattcaagaggtggtggaagattt
ggctcaagaggtggatcaagaggttcagattcaagaggtggtagatcttctggtgataga
aattcaagaggtggtgatagagatagagctccaagaggtgatagaccaagaggtgataga
ccaagaggtgacagacctgcttctgatagaccaagaagtgatagaccaagaacagacaaa
cctaaaactgatagaccatcaggtgatagaagtagaaagagagattaa

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