Arcobacter cloacae: ACLO_0039
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Entry
ACLO_0039 CDS
T06845
Name
(GenBank) DEAD-box ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
aclo
Arcobacter cloacae
Pathway
aclo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aclo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACLO_0039
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aclo03019
]
ACLO_0039
03009 Ribosome biogenesis [BR:
aclo03009
]
ACLO_0039
Enzymes [BR:
aclo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ACLO_0039
Messenger RNA biogenesis [BR:
aclo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ACLO_0039
Ribosome biogenesis [BR:
aclo03009
]
Prokaryotic type
rRNA helicases
ACLO_0039
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
Cas3-like_C_2
Ribosomal_L12_N
Motif
Other DBs
NCBI-ProteinID:
QKF88588
LinkDB
All DBs
Position
39712..41319
Genome browser
AA seq
535 aa
AA seq
DB search
MTFNEFNFKEQLQRAIDDAGFKEPSPIQEQAIPFILAGKDIVGQAHTGTGKTAAFGLPIL
NKLKGKSGVEAVVIVPTRELAMQVSDEIYRFGKLLGINTATVYGGQAYARQIKLIENASV
IIATPGRFLDLLRGEKIDIKPDFVILDEADEMLDMGFLDDIKEIFTFLPKERQTLLFSAT
MPTAIKNLAKTILNEPEFVTLTKSDVTNSKITQTFYVVDERERDDALIRLYDYKNPTKSI
IFCRTKKEVDRLSTFMVSQGFMAKGLHGDMEQRQREEAIRAFKTSKLEILIATDVAARGL
DVNDVSHVFNYHLPFDSESYVHRIGRTGRAGKEGVAVSIVTPHEFRMLQKIEKNIGTKLE
AKIVPNIDSVKVKKIAELKQQISEQEIKDYALALVEELKEEFDISTIAFKLASMISASTY
VQGNNNIGKSESDIKRLIENSSRYEGEGSSGRNSRGGGRFGSRGGSRGSDSRGGRSSGDR
NSRGGDRDRAPRGDRPRGDRPRGDRPASDRPRSDRPRTDKPKTDRPSGDRSRKRD
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atgacatttaatgaattcaatttcaaagaacaattacaaagagcaattgacgatgcaggt
tttaaagagccaagtcctattcaagaacaagctattccatttatattagcaggtaaagat
attgttggtcaagcacatacaggtacaggtaaaacagcagcatttggacttcctatttta
aataaattaaaaggaaaatcaggcgttgaagctgttgttatagttccaacaagagagctt
gcaatgcaagtttctgatgaaatttatagatttggaaaacttttaggaattaacacagct
acagtttatggtgggcaagcttatgctagacaaattaaattaattgaaaatgctagtgtt
attatagcaactccaggaagattccttgatttattaagaggtgaaaaaattgatataaaa
cctgattttgttattcttgatgaagctgatgaaatgcttgatatgggatttttagatgat
attaaagagatttttactttcttaccaaaagagagacaaactctattattctctgcgact
atgccaacagctattaaaaatcttgcaaaaactattttaaatgagccagagtttgtaact
ttaacaaaaagtgacgtaacaaattcaaaaatcactcaaactttttatgttgttgatgaa
agagaaagagatgatgcactaattagattgtatgactataaaaacccaacaaaatctata
attttctgtagaactaaaaaagaagttgatagattatcaacatttatggtttctcaagga
tttatggcaaaaggtcttcatggtgatatggagcaaagacaaagagaagaggctattaga
gcatttaaaacttcaaaattagagattttaattgcaacagatgttgcagcacgtggactt
gacgtaaatgatgtgtctcatgtatttaattaccatttaccatttgattctgaatcttat
gttcatagaattggaagaacaggacgtgctggtaaagaaggagtagctgtatctattgta
actcctcatgaatttagaatgttacaaaaaattgaaaaaaatataggaactaaattagaa
gctaaaattgttccaaatattgattctgtaaaagttaaaaaaattgcagaattaaaacaa
caaattagtgaacaagagataaaagattatgctttagcattagttgaagagttaaaagaa
gagtttgatatttcaactattgcatttaaattagcttcaatgatttctgcatctacatat
gttcaaggaaacaataatattggtaaatctgaatctgatattaaaagattaattgaaaat
tcatcaagatatgagggtgaaggttcatcaggaagaaattcaagaggtggtggaagattt
ggctcaagaggtggatcaagaggttcagattcaagaggtggtagatcttctggtgataga
aattcaagaggtggtgatagagatagagctccaagaggtgatagaccaagaggtgataga
ccaagaggtgacagacctgcttctgatagaccaagaagtgatagaccaagaacagacaaa
cctaaaactgatagaccatcaggtgatagaagtagaaagagagattaa
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