Arcobacter cloacae: ACLO_0419
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Entry
ACLO_0419 CDS
T06845
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
aclo
Arcobacter cloacae
Pathway
aclo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aclo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACLO_0419 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aclo03019
]
ACLO_0419 (recQ)
03400 DNA repair and recombination proteins [BR:
aclo03400
]
ACLO_0419 (recQ)
Enzymes [BR:
aclo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ACLO_0419 (recQ)
Messenger RNA biogenesis [BR:
aclo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ACLO_0419 (recQ)
DNA repair and recombination proteins [BR:
aclo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
ACLO_0419 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
HTH_40
ResIII
SWI2_SNF2
Helicase_Sgs1
DUF1539
Motif
Other DBs
NCBI-ProteinID:
QKF88945
LinkDB
All DBs
Position
416396..418501
Genome browser
AA seq
701 aa
AA seq
DB search
MNKKYQILKDIFGHDKFRSFQEEVVDTILAKQDVLTILPTGGGKSLCYQLPTLLMNGTTV
VISPLIALMQDQIKALNDLNIKASMISSATSNDENSFTLQKLLNGELKFIYVAPERFTSN
EFVGVLQRININYFVIDEAHCVSAWGHEFRAEYRNLDRLKRFFPNTSICAFTATATKKVE
ADISQSLNLQNPRHFRAKTVRDNLDIKVEPRISNGKTQILNFLKTHKGLCGIIYTFTRKE
AESTAEFLSESGYSAKAYHAGLSNDRKNEVFNDFVYEKIDIVVATIAFGMGIDKSNIRFV
IHTSLPKTLENYYQEIGRAGRDGEMSYVYMLYSKSDEVKRKIQIEEAIDDGYKQTGLDKL
EFMYRYCVSNNCRHKMIAGYFEDEIEACKTLCDNCTKGEVELVDVSVDAQKLLSAIYRTE
QRFGLNHIIDILRGSKNQKLLEFGHDKLSVYNLGIDKSKNEWIAIADKLIDIQALVLGDF
RVLKISPLGLEILKGKEKLFIDSDKLGIASKIQEEEMELTFDELIYERFRTLRREIALEN
EVPAYVIFGDKTLKEFANKLPTSKDEMLNINGVGLVKYEKYGESFLNLSKEIKEEFKEKL
EQKEPLKKLTKTYLETFDLIQEGKNVEEIAQIRDLAVTSILGHISVLFEHEKISKEKKEE
LLKPLEISKEIRNWIEEGLKLDTLKELRQKLYLYEYLSKES
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atgaataaaaaataccaaatactaaaagatatttttggacatgataaatttagaagtttc
caagaagaggttgttgatacaattcttgctaaacaagatgttttgacaattttgccaacg
ggtggtggaaaatcactttgttatcaacttccaactttgcttatgaatggaactactgtt
gtaatctctcctttaattgctttaatgcaagaccaaataaaagctcttaatgatttgaat
attaaagcttctatgataagttcagctacttcaaatgatgaaaatagtttcactttacaa
aagcttttaaatggggaattaaaatttatttatgttgcacctgaaaggttcacttcaaat
gagtttgtaggtgtgcttcaacgaataaatataaactattttgtaattgatgaagctcac
tgtgtttctgcttgggggcatgagtttagggctgaatatagaaatcttgatagattaaaa
agattttttccaaatacctcaatttgtgcatttactgcaactgctacaaaaaaagttgag
gctgatatttctcaaagtcttaatttacaaaacccaagacattttagagcaaaaactgta
agagataatcttgatataaaagttgaaccacgaatctcaaatgggaaaacacaaatacta
aatttcctaaaaactcacaaaggtttatgtggaattatctatacttttacacgaaaagaa
gcagaatcaacggctgagtttttgagtgaaagcggatatagtgcaaaagcctatcatgcg
ggacttagtaatgatagaaaaaatgaagtttttaatgattttgtatatgaaaaaatagat
attgtagttgcaaccatcgcttttggaatgggaattgataaatcaaatattcgttttgta
attcacacttcattgcctaaaacccttgaaaattattatcaagagataggtcgagcaggg
cgtgatggtgaaatgtcttatgtttatatgctttattcaaaaagtgatgaggtaaaaaga
aaaatccaaattgaagaagctattgatgatggttataaacaaacagggcttgataaattg
gagtttatgtatagatattgtgtgagcaataattgccgtcacaagatgatagcaggatat
tttgaagatgaaatagaagcttgtaaaactttgtgtgataactgtacaaaaggtgaagtt
gaacttgtagatgtaagtgttgatgctcaaaaacttttaagtgcaatttatcgaacagaa
caaagatttggattaaatcatattattgatattttaagaggttctaaaaatcaaaaactt
ttagagtttggacatgataaattgagtgtttataatctaggaattgataaaagtaaaaat
gaatggattgcaatcgctgataaactaatcgatattcaagctttggttttaggggatttt
agagttttaaaaataagtcctttgggtttagaaattttaaaaggcaaagagaaacttttt
atcgatagtgataaattaggaattgcttcaaaaattcaagaagaagagatggaacttact
tttgatgaattgatttatgaaagatttagaactttaagaagagaaatagcccttgaaaat
gaagttccagcttatgtgatttttggggataaaactttaaaagagtttgcaaataaactg
ccaacttcaaaagatgaaatgttaaatataaatggtgttggtcttgtaaaatatgaaaaa
tatggagagagttttttgaatttatcaaaagagataaaagaggaattcaaagagaaactt
gaacaaaaagagccattaaaaaaactcacaaaaacatatcttgaaacttttgatttaatt
caagagggaaaaaatgtagaagaaatagctcaaattagagatttagcagtaacttcaatt
cttgggcatatttcagttttatttgagcatgaaaaaatctcaaaagagaaaaaagaggag
ttattaaaaccacttgaaatttctaaagagattagaaattggatagaagagggactaaaa
ttagatacactaaaagagttaagacaaaaactttatttgtatgaatatttatcaaaggag
tcgtaa
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