Arcobacter cloacae: ACLO_0533
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Entry
ACLO_0533 CDS
T06845
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
aclo
Arcobacter cloacae
Pathway
aclo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aclo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ACLO_0533 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aclo03400
]
ACLO_0533 (mfd)
Enzymes [BR:
aclo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ACLO_0533 (mfd)
DNA repair and recombination proteins [BR:
aclo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ACLO_0533 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
UvrB_inter
CarD_TRCF_RID
SNF2-rel_dom
Cas3-like_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QKF89058
LinkDB
All DBs
Position
531719..534706
Genome browser
AA seq
995 aa
AA seq
DB search
MKNIYEFLKNLKDEKRLKECQLLIVNDDRQAQIASDIVSFLGFKPFVLADFRANFGDDLL
SFSDELHEITKALGDFYSYKKQDKILISPIRTISFSLPKEKCFESFTINFADTLKIDELK
SKLYNWGYYFVDIVTSEGEVSIRGDIIDICPLGSEAGFRISLFDDEVESIRKFDIEDQKS
SKEEIETISINPAFLALDEKSFEEINEQVQTVSSDAFIKDIHSLGFWYLGDLGEYLSQNL
SSFITQEALEELDEVYVFEEKRINKDKFLLTPQIYNSKNYQEINPANIKEFISFHKEKKI
TIISGTEAKVKGYDLDLNDKNIKYIFDNQIINLVSNEEVIISLNKEIKKRRKKKVKLVLD
ELQYNDFVVHEKHGIGQYKGIEPVTVMGAKRDFVIVQYQGEDKLLIPVENIDLIDRYVAD
GNSYAVVDKLGKGSFAKLKEKVKDRLFAIANDIIKLAAARELVNGIKINTDKKILEDFQK
TAGFEYTKDQKRSIKEIFADLSSGRVMDRLLSGDVGFGKTEVAMNALLAVILDGYQTIFV
CPTTLLATQHYHSIQKRLENFGIRVAKLDGKTTAKEKTSIKKGLENGDIKLVIGTHSLLD
IKTSNLALVIIDEEHKFGVKQKEKLKQLREDVHIFSMSATPIPRTLNLALSKLKGMSSLL
TPPSERLGVRTYVKEYSEKLIKEVILREKRRGGQLFYVHNNIASIEAKKADIEAIVPNIK
IDIIHSQIKPDHAEKIIEAFENKEFDILLATSIVESGIHLPNANSIIIDGADRFGIADLH
QLRGRVGRSNKEGYCYYVVEDKKQITPDAVKRLVALESNSYLGSGTALAHQDLEIRGGGN
IIGEAQSGHIKQIGYGLYLKMLEDTLASLSGEDRVEKKSVDIKLAISAYISEEYISEDRV
RLELYRRLSKASDIQKVYAIEEEMEDRFGKPDVVTKQFIELIIIKILALKLGIQTISSYE
MNITFTKADDTKETIKSPSKDDDDIIATTLRYLRK
NT seq
2988 nt
NT seq
+upstream
nt +downstream
nt
gtgaaaaatatttatgaatttttaaaaaatttaaaagatgaaaaacgattaaaagagtgt
caacttttaatcgtaaacgatgacagacaagctcaaatagcttctgatatagtttcattt
ttaggttttaagccttttgtgttagctgattttagagcaaattttggagatgatttactc
tcttttagtgatgaattacatgaaattacaaaagctttaggagatttttattcctataaa
aaacaagataaaatcctaatctctccaatacgaactatctcattttcacttccaaaagag
aaatgttttgaaagttttactataaattttgcagatactttaaaaattgatgagttaaaa
tcaaaactttacaattggggatattactttgtagatattgtaacaagtgaaggagaagtc
tctattcgtggagatattattgatatttgcccacttggaagtgaagcaggatttagaatt
tctttattcgatgatgaagttgaaagtattagaaaatttgacattgaagaccaaaaatca
tcaaaagaagagatagaaactatttcgataaacccagcttttttagctttagatgaaaaa
tcatttgaagagataaatgaacaagttcaaactgtttcaagtgatgcatttataaaagat
attcactctttaggtttttggtatttaggtgatttaggtgaatatttatctcaaaattta
tcttcatttattacccaagaagctttagaagagttagatgaagtttatgtttttgaagaa
aaaagaataaacaaagataaatttttactcacacctcaaatttataatagtaaaaactat
caagagataaatccagcaaacataaaagagtttatctcttttcataaagagaaaaaaatc
actatcataagtggaactgaagccaaggtaaaaggttatgatttagatttaaatgataaa
aatatcaaatatatttttgacaatcaaattataaatcttgtaagtaatgaagaagtaatt
atttctttaaataaagaaataaaaaaacgaagaaagaaaaaagtaaaacttgttcttgat
gagttacaatacaatgattttgtagttcatgaaaaacacggtattggtcagtataagggt
attgaacctgttactgtaatgggtgcaaaaagagattttgttattgttcaatatcaaggt
gaagataaacttttaattcctgttgaaaatattgatttaattgatagatatgtagctgat
ggaaactcttatgcggttgttgataagctaggtaagggaagctttgcaaaattaaaagaa
aaagttaaagatagactttttgccattgcaaatgatattataaaattagcagctgctaga
gaacttgtaaatggaattaaaatcaatacagataaaaaaattcttgaagatttccaaaaa
actgctggatttgaatacacaaaagaccaaaaaagaagcatcaaagagatttttgctgat
ttaagtagcggtcgagttatggatagacttctttctggtgatgttggttttggaaaaact
gaagttgctatgaatgctttacttgctgttatacttgatggttatcaaactatttttgta
tgtccaacaacacttttggcaactcaacactatcatagtattcaaaaaagacttgaaaat
tttggaataagagttgctaaacttgatggaaaaacaacagcaaaagagaaaacttctatc
aaaaaaggtttggaaaacggggatataaaacttgttattggaactcactctttacttgat
ataaaaacttctaatttagctttagtaatcatcgatgaagagcataagtttggagtaaaa
caaaaagagaaactaaaacaattaagagaagatgtacatattttctctatgagtgcaact
ccaattccaagaactttaaatctagccttatcaaaactaaaaggtatgagttcacttctt
acccctccaagtgaaagattgggagtgagaacttatgtaaaagagtatagtgaaaaacta
atcaaagaggttattttaagagaaaaaagaagaggtggacaactattttatgttcacaat
aacatagcttcaattgaagcaaaaaaagcagatatagaagcaatagttccaaatatcaaa
atagatattattcactctcaaataaaacctgaccatgctgaaaaaatcattgaagccttt
gaaaacaaagagtttgatattcttcttgctacttcaatagttgaatcaggaattcatctt
ccaaatgcaaactctattatcattgatggagcagatagatttggaattgcagatttacat
cagcttcgaggacgtgttggacgaagtaataaagaagggtattgttattatgtagttgaa
gataaaaaacaaatcacacctgatgcggtaaaaagacttgttgctttagagtcaaactca
tatttaggaagtggaactgctttagctcatcaagatttagagattcgtggtggtggaaat
atcataggtgaggctcaaagtggacatatcaaacaaataggatatggtttatatcttaaa
atgttagaagatacccttgcaagtttaagtggagaagatagggttgaaaagaaatctgtt
gatataaaactagcaattagtgcctatattagtgaagagtatatcagtgaagatagagtt
agacttgaactttatagaaggctaagtaaggctagtgatatacaaaaagtttatgctatc
gaagaagagatggaagatagatttggaaaacctgatgttgttacaaaacagtttatagaa
ctaattatcataaagattttagctttaaaacttggaattcaaactattagttcttatgaa
atgaatattacatttacaaaagctgatgatacaaaagagacaattaaaagtccaagtaaa
gatgatgatgatattattgctactacgttgaggtatcttagaaaataa
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