Arcobacter cloacae: ACLO_1676
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Entry
ACLO_1676 CDS
T06845
Name
(GenBank) DEAD-box ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
aclo
Arcobacter cloacae
Pathway
aclo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aclo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACLO_1676
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aclo03019
]
ACLO_1676
Enzymes [BR:
aclo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ACLO_1676
Messenger RNA biogenesis [BR:
aclo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ACLO_1676
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
AAA_19
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
QKF90166
LinkDB
All DBs
Position
complement(1665077..1666429)
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AA seq
450 aa
AA seq
DB search
MSFSKLGLCAELLHAIKEEGYTTATPIQSKSIPVILSKKDVLAAAQTGTGKTAGFTLPLL
QRLKESYSKDKKSHIRALILVPTRELAAQVAQSVETYGKYLPFKTAVIFGGVGINPQKAL
LKKGVDIVIATPGRLLDLVSQDSIDLSKVEFLVLDEADRMLDMGFINDIKKILKLVPKQR
QNLLFSATFSDDIKKLADGLLNSPILIEAAKANSTSHKVEQTVHHVDRDRKKELLLHLVN
KNNWQQVLVFTRTKHGANKLSEALVKDGISSAAIHGNKSQGARTKALDDFKLGNVRVLVA
TDIAARGIDIDNLPHVINFELPNIAEDYVHRIGRTGRAGNTGEAISLVCVDEHDYLFGIE
KLIKQKIKKIEINGFKVNPNIKAEPIGNRNNRANNSNSNSKRSFGKKRVEENSSSSTKPR
GNNNRFASKKSDSTSSVTKNRRTNSSFKNN
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atgtcattttcaaaattaggtttatgtgcagaacttcttcatgcaattaaagaagaggga
tatacaactgcaacgccaattcagtcaaaatcaattcctgtgattttatcaaaaaaagat
gttttagcagcggctcaaacgggtactggaaaaacagctggttttacacttccactttta
caaagattaaaagagagttattcaaaagataaaaaatctcatataagagctttgatttta
gttccaacaagagaacttgcagctcaagttgcacaaagtgttgaaacttatggaaaatat
cttccatttaaaacagcagttatttttggaggagttggtataaatccacaaaaggcactt
ttaaaaaaaggtgttgatattgtgattgcaactcctggaagattgcttgatttagtttca
caagacagtattgatttatcaaaagtggagtttttagtgttggatgaagcagatagaatg
cttgatatgggatttataaatgatattaaaaagattttaaaactagttccaaaacaaaga
caaaatcttcttttctcagctactttctcagatgatattaaaaaattagcagatggatta
ctaaattctcccattttaatagaagcagcaaaggcaaatagcacttcacacaaagttgag
caaactgttcatcatgtggatagagatagaaaaaaagagcttttattacatttagtaaat
aaaaacaactggcaacaagtgttggtttttacaagaacaaaacatggggcaaataaacta
agtgaagcacttgtaaaagatggaataagttcagcagcaattcatggaaataaatcacaa
ggtgcaagaacaaaagctttagatgattttaagctaggaaacgtaagagttttagttgca
actgatatcgctgcaaggggaattgatatagataatcttcctcatgttataaactttgaa
ttaccaaatatcgctgaagattatgttcacaggattggtagaactggaagagctggaaat
acaggtgaggctatatctttagtttgtgttgatgagcatgactatttgtttggaatagag
aaattaattaaacaaaagattaaaaagatagaaataaatggatttaaagtaaatccaaat
ataaaagcagaacctattggcaatagaaataatagagctaataattcaaactctaattct
aaaagaagttttggtaaaaaaagagttgaagagaactcttcttcaagtacaaaaccaaga
ggaaataacaatagatttgcttcaaagaaaagtgattcaacatctagtgtaacaaaaaac
agaagaacaaactcaagctttaaaaataactaa
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