Granulicella tundricola: AciX9_0356
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Entry
AciX9_0356 CDS
T01411
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
acm
Granulicella tundricola
Pathway
acm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
acm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AciX9_0356
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
acm03400
]
AciX9_0356
Enzymes [BR:
acm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AciX9_0356
DNA repair and recombination proteins [BR:
acm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AciX9_0356
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
AAA_22
UB2H
Motif
Other DBs
NCBI-ProteinID:
ADW67428
UniProt:
E8WWV0
LinkDB
All DBs
Position
complement(429041..432742)
Genome browser
AA seq
1233 aa
AA seq
DB search
MILPFVRDLVADLKLSASYDRVRRHLVSGQGRRRVAGLTFTARALYLPLFAAASESPALI
LVADNKAAEALHQAILATCELTGALDPASIVRLPAHDVLPFESLSPHPEIQETRAASLWK
ITSKSAKLVIAPIESACLKLFPADFYSALALRLRVNEEYLPDMLVEHLLSVGYTRVDVVE
MPGQLTLRGGILDVYSPEMDRPIRIDFFGDEIESIRKFDPETQRSSSQLDTALLLPLTEI
PITEKVLEAINARLTRSGSAAAAILEGGDTPAELQTHVSTRTGADATVFPGWEFFAPVAG
ATKTLLDLLGPQTRVFVEEPSMLKNQGERWWNKVEQRHERSGIGNLIRPEDLYVSPWELD
DRIRGFCGAELDQLGAVDVLDADRSDLSEVEFHSRPTMRFHGSIPALIDQLKTLTSPSAD
NRILLTAPNQGEVERLAGLLQEYGVPYRLGSRNMAPGSETMYSESSYLAGNVSTPVIVRV
PIANGVQILDLIPSTARQLIVFGANDLTDEADITARPATRKSKTSAFISDFRDLAVGDYV
VHVEHGIAQYCGLRVLEEDTDNPLELMILEFADQAKLYVPLTRLDLIQKYRSTETGPAPV
LNKLGNPAWQKTKARVKKAMADMAGELIKLYAQRKAAQGTAFSPDNNLQREFEDAFPFNE
TDDQLAAIADIKRDMESTQPMDRLLCGDVGYGKTEVAMRAAFKAVQDSKQVAILTPTTVL
SFQHFESFKKRFANFPVKVEMLSRFRTAKEKAEIMEQTEQGKVDILIGTHAVLGQKLKFQ
DLGLLVVDEEQRFGVRHKERLKQMRAAIDVLAMSATPIPRTLHMSLVGLRDMSVIETPPK
DRMAIQTIVAKFDEKLVRTAIEMELERGGQSYFVHNRVETIYEMASMIREQVPSARVIVG
HGQMPEAELERVMLAFMNHEYDVLVATSIIENGLDIPLANTIIINRADRHGLSELYQLRG
RVGRSNRRAYAYLLIPPDTELTEIARRRLAALKEFSDLGAGFKIAALDLELRGAGNMLGG
EQSGHIEAIGFEMYTTMLEEAVNKLKGEQDKPSETTVLNLGISVRIDADYIPEENQRLRM
YKRIAGALDQATIDDVRSELHDRYGAPPETVLNLLAAGELRLQAERLGIAQLDRKRTQIE
LPNPANRKQPIKTFVEMLHIRFAIPEKNVLGDTSLASATVDPGLLMKIIARNAKRGAQFT
PQGILRWPLTSPKAEEVLAETRALLDSLTPATP
NT seq
3702 nt
NT seq
+upstream
nt +downstream
nt
atgatccttcccttcgtccgcgatctcgtcgccgacctaaaactctctgcctcctacgac
cgcgttcgccgccaccttgtctccggccagggccgccgccgcgtcgccggtcttaccttc
accgcccgcgccctgtacctgccgctcttcgccgccgcgtcagagagccccgcgctcatc
ctcgtcgcggacaacaaggccgccgaggctctccatcaggccatcctcgccacctgcgag
ctcaccggcgcgctcgaccccgcctccatcgtccgcctcccggctcacgatgtcctgccc
tttgaaagcctctctccgcaccccgagatccaggagacccgcgccgcctccctctggaag
atcaccagcaagtcggccaagctcgtcatcgcgcccatcgagtcggcctgcctcaagctc
ttccccgcagacttctactccgccctcgcgctgcgcctgcgcgtcaacgaagagtacctc
ccggacatgctcgtcgagcacctcctctccgtcggctacacccgcgtcgacgtcgtcgag
atgcccggccagctcaccctgcgcggcggcatcctggacgtctactcgcccgagatggac
cggcccatccgcatcgacttcttcggcgatgagatcgagtccatccgcaagttcgacccc
gaaacccagcgcagcagctcgcagctcgacaccgcactcctgctcccgctgaccgagatc
cccatcacggaaaaggtcctcgaagccatcaacgcccgcctcacccgttcaggctccgca
gccgcagcgatcctggaaggcggcgatacgccggctgagctccagacccacgtgtccacc
cgcaccggcgcagatgcaaccgtcttccccggctgggagttcttcgcgcccgtcgccgga
gccaccaagacgctcctcgacctcctcggcccgcagacccgcgtcttcgtcgaagagccc
tccatgctcaagaatcaaggcgagcgctggtggaataaggtcgagcagcgccatgagcgc
agcggcatcggcaacctcatccggccggaagacctctacgtctccccctgggagctcgat
gaccgcatccgcggcttctgcggcgcagagctcgaccagctcggcgcggtagacgtcctc
gacgccgaccgcagcgatctctcggaggtcgagttccactcccggccgacgatgcgcttt
cacggctccatcccggccctgatcgatcagctcaagacccttaccagccccagcgcggac
aaccgcatcctccttaccgcgcccaaccagggcgaggtcgaacgcctcgccggcctgctg
caggagtatggggttccctaccgtctcggctcccgcaatatggccccgggttccgagacc
atgtactccgagtcctcctatctcgccggcaacgtcagcacgccggtcatcgtgcgcgtc
cccatcgccaacggcgtgcagattcttgacctgatcccaagcaccgcccgtcagctcatc
gtcttcggcgcgaacgacctcaccgacgaagccgacatcaccgcccgccccgccacgcgc
aagtccaagacctccgccttcatctccgacttccgcgacctggctgtcggggattacgtg
gtgcatgtagaacacggcatagcccagtactgcggcctgcgcgtgctggaagaagacacc
gacaaccctctcgagctcatgatcctcgagttcgcagaccaggccaagctctacgtcccc
ctgacccgcctggacctcatccagaagtaccgcagcacggagaccgggcctgcgcccgtg
ctcaacaagctcggcaaccccgcctggcagaagaccaaggcccgcgtcaaaaaagccatg
gcggatatggccggcgagctcatcaagctctacgcccagcgcaaagccgcgcaaggcaca
gccttcagcccggacaacaacctccagcgcgagttcgaagacgccttccctttcaatgag
acagacgaccagctcgcagccatcgcagacatcaagcgagacatggagtccacccagccc
atggaccgcctcctctgcggagacgtcggctacggcaagacagaggtcgccatgcgcgcg
gcgttcaaggccgtgcaggactccaagcaggtggcaatccttacccccaccaccgtcctc
tcctttcagcacttcgagtccttcaagaagcgcttcgccaatttccccgtcaaggtggag
atgctctcccgcttccgcactgccaaggaaaaagccgagatcatggagcagaccgagcag
ggcaaggtcgacatcctcatcggcacccacgccgtcctcggccagaagctcaagttccag
gacctcgggctgctcgtcgtcgatgaagaacagcgcttcggcgtccgtcacaaggagcgc
ctgaagcagatgcgcgccgccatcgacgtcctcgccatgtccgccacgcccatcccccgc
acgctccacatgtcgctcgtcggcctgcgggatatgtccgtcatcgagactccgcccaaa
gaccgcatggccatccagaccatcgtcgccaagttcgacgagaagctggtccgcactgcc
atcgagatggagctcgagcgcggcggccagtcctacttcgtccacaaccgcgtcgagacc
atctatgagatggccagcatgatccgcgagcaggtcccctcagcccgcgtcatcgtaggc
cacggccagatgccggaggccgagctcgaacgcgtcatgctcgccttcatgaaccatgag
tacgacgtcctcgtcgccaccagcatcattgaaaacgggctcgacatcccgctcgccaac
accatcatcatcaaccgggctgatcgccatgggttatcggagttgtaccaactccgaggg
cgcgtaggccgcagcaatcgccgcgcctacgcctacctgctcatcccgcctgacaccgaa
ctcaccgagatcgcacgccgccgcctcgccgccctcaaggagttctcggacctcggcgca
ggcttcaagatcgcagcgctcgacttagagctaagaggcgcgggcaacatgctcggcggc
gagcagtccggccacatcgaagccatcggctttgagatgtacaccaccatgctggaagag
gccgtcaacaagctcaagggtgagcaggacaagccttccgagaccaccgtcctcaacctc
ggcatctccgtccgcatcgacgccgactacatccccgaagagaaccagcgcctgcgcatg
tacaagcgcatcgccggcgcactcgaccaggccaccatcgacgacgtccgcagcgagctt
cacgaccgctacggcgcaccacccgagaccgtattgaatctcctcgcagccggcgagcta
cgcctccaggcagagcgcctcggcatcgcccagctcgaccgcaagcgcacccagatcgag
ctccctaacccagccaaccgcaaacaacccatcaagaccttcgtcgagatgctccacatc
cgcttcgccatcccggagaagaacgtcttgggcgatacgtccctggccagcgccacggtc
gatcccggcctgctcatgaagatcatcgcccgcaacgccaaacgcggcgcccagttcacc
ccccagggcatcctccgctggcccctcaccagccccaaagccgaagaagtcctcgccgag
acccgcgccctcctagactccctaacccctgcaactccgtag
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